Validation Results for GenomicsReporting

Generated Wed Nov 20 11:47:37 EST 2019, FHIR version 4.0.1 for hl7.fhir.uv.genomics-reporting#1.0.0 (canonical = http://hl7.org/fhir/uv/genomics-reporting (history))

IG Publisher Version: v1.0.1-SNAPSHOT

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FilenameErrorsInformation messages & Warnings
Build Errors00
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.010
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.010
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.010
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.010
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.010
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.000
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.000
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src-generated\resources\genomics-reporting00
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\AnnotationExample00
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\CG-IG-HLA-FullBundle-01016
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\HLAB1502-pgx-example00
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\SNVexample10
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\complexVariant-nonHGVS00
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\compound-heterozygote20
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\diagnosticreport-cgexample62
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\diagnosticreport-hla-glstring-r405
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\diagnosticreport-pgxexample00
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\genotype-hla-a-glstring-r402
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\haplotype-hla-a-1-r401
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\obs-idh-ex01
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\oncology-diagnostic20
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\oncology-report-example240
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\oncologyexamples-r452
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\report-CYP2C1900
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\sequence-phase-relation-CYP2C1900
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\servicerequest-hla-a-r400
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\specimen-hla-r400
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\codesystem-tbd-codes00
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\conceptmap-dna-change-type00
C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\valueset-tbd-codes00
GenomicsReport00
Medication Statement00
Observations00
Service Request00
Specimen00
Task profiles00

n/a

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\valueset-hgnc.xml

PathSeverityMessage
hgncerrorError from server: Unable to provide support for code system http://www.genenames.org/geneId

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\valueset-dna-change-type.xml

PathSeverityMessage
dna-change-typeerrorError from server: Unable to provide support for code system http://sequenceontology.org

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\valueset-variant-inheritance.xml

PathSeverityMessage
variant-inheritanceerrorError from server: Unable to provide support for code system http://sequenceontology.org

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\valueset-functional-annotation.xml

PathSeverityMessage
functional-annotationerrorError from server: Unable to provide support for code system http://sequenceontology.org

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\valueset-hgvs.xml

PathSeverityMessage
hgvserrorError from server: Unable to provide support for code system http://varnomen.hgvs.org

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\valueset-seq-phase-relationship.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\codesystem-seq-phase-relationship.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src-generated\resources\genomics-reporting.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\AnnotationExample.json

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\CG-IG-HLA-FullBundle-01.xml

PathSeverityMessage
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[9].resource.derivedFrom[0]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[9].resource.derivedFrom[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[10].resource.derivedFrom[0]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[10].resource.derivedFrom[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[16].resource.derivedFrom[0]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[16].resource.derivedFrom[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[17].resource.derivedFrom[0]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[17].resource.derivedFrom[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[23].resource.derivedFrom[0]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[23].resource.derivedFrom[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[24].resource.derivedFrom[0]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[24].resource.derivedFrom[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[26].resource.extension[0]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[26].resource.extension[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[26].resource.codewarningThe code system "http://genenames.org/geneId" is not known for the code "HGNC:588"
Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[26].resource.code.coding[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\HLAB1502-pgx-example.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\SNVexample.xml

PathSeverityMessage
Observation/SNVexample: Observation.component[4].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.(Ala412Val))

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\complexVariant-nonHGVS.xml

✓

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\compound-heterozygote.xml

PathSeverityMessage
Bundle/compound-heterozygote: Bundle.entry[0].resource.component[0].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#NM_022787.3:c.769G>A)
Bundle/compound-heterozygote: Bundle.entry[1].resource.component[0].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#NM_022787.3:c.53A>G)

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\diagnosticreport-cgexample.xml

PathSeverityMessage
Bundle/diagnosticreport-cgexample: Bundle.entry[6].resource.component[21]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant
Bundle/diagnosticreport-cgexample: Bundle.entry[6].resource.component[22]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant
Bundle/diagnosticreport-cgexample: Bundle.entry[6].resource.component[4].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://example.org/HGVS.g#NC_000003.11:g.128625063C>T)
Bundle/diagnosticreport-cgexample: Bundle.entry[6].resource.component[6].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://example.org/HGVS.c#c.1249C>T)
Bundle/diagnosticreport-cgexample: Bundle.entry[6].resource.component[7].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://example.org/HGVS.p#p.Arg417Cys)
Bundle/diagnosticreport-cgexample: Bundle.entry[10].resource.component[2].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://example.org/HGVS.c#c.886C>T)
Bundle/diagnosticreport-cgexample: Bundle.entry[10].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://example.org/HGVS.p#p.Arg296Cys)
Bundle/diagnosticreport-cgexample: Bundle.entry[11].resource.component[2].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://example.org/HGVS.c#c.1457G>C)

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\diagnosticreport-hla-glstring-r4.xml

PathSeverityMessage
DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.result[0]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report
DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.result[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report
DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.result[2]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report
DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.codewarningThe code system "http://genenames.org/geneId" is not known for the code "588"
DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.code.coding[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\diagnosticreport-pgxexample.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\genotype-hla-a-glstring-r4.xml

PathSeverityMessage
Observation/genotype-hla-a-glstring-r4: Observation.derivedFrom[0]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype
Observation/genotype-hla-a-glstring-r4: Observation.derivedFrom[1]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\haplotype-hla-a-1-r4.xml

PathSeverityMessage
Observation/haplotype-hla-a-1-r4: Observation.derivedFrom[0]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\obs-idh-ex.xml

PathSeverityMessage
Observation/obs-idh-ex: Observation.component[2]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/inherited-disease-pathogenicity

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\oncology-diagnostic.xml

PathSeverityMessage
Bundle/oncology-diagnostic: Bundle.entry[4].resource.component[1].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#NC_000007.13:g.140453136A>T)
Bundle/oncology-diagnostic: Bundle.entry[4].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.Val600Glu)

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\oncology-report-example.json

PathSeverityMessage
Bundle/oncology-report-example: Bundle.entry[3].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.3140A>G)
Bundle/oncology-report-example: Bundle.entry[3].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.H1047R)
Bundle/oncology-report-example: Bundle.entry[4].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.34G>T)
Bundle/oncology-report-example: Bundle.entry[4].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.G12C)
Bundle/oncology-report-example: Bundle.entry[5].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.1394G>A)
Bundle/oncology-report-example: Bundle.entry[5].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.R465H)
Bundle/oncology-report-example: Bundle.entry[6].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.7900_7901delCA)
Bundle/oncology-report-example: Bundle.entry[6].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.Q2634Afs*20)
Bundle/oncology-report-example: Bundle.entry[7].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.333G>T)
Bundle/oncology-report-example: Bundle.entry[7].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.K111N)
Bundle/oncology-report-example: Bundle.entry[8].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.3960C>T)
Bundle/oncology-report-example: Bundle.entry[8].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.=)
Bundle/oncology-report-example: Bundle.entry[9].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.9_32del)
Bundle/oncology-report-example: Bundle.entry[9].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.A4_P11del)
Bundle/oncology-report-example: Bundle.entry[10].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.2086C>T)
Bundle/oncology-report-example: Bundle.entry[10].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.R696C)
Bundle/oncology-report-example: Bundle.entry[11].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.4964G>A)
Bundle/oncology-report-example: Bundle.entry[11].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.R1655H)
Bundle/oncology-report-example: Bundle.entry[12].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.12118G>A)
Bundle/oncology-report-example: Bundle.entry[12].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.A4040T)
Bundle/oncology-report-example: Bundle.entry[13].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.1290C>A)
Bundle/oncology-report-example: Bundle.entry[13].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.N430K)
Bundle/oncology-report-example: Bundle.entry[14].resource.component[3].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#c.2372C>T)
Bundle/oncology-report-example: Bundle.entry[14].resource.component[5].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.A791V)

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\oncologyexamples-r4.xml

PathSeverityMessage
Bundle/oncologyexamples-r4: Bundle.entry[5].resource.component[0].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#9:g.5073770G>T)
Bundle/oncologyexamples-r4: Bundle.entry[5].resource.component[1].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.Val617Phe)
Bundle/oncologyexamples-r4: Bundle.entry[6].resource.component[0].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#4:g.55972974T>A)
Bundle/oncologyexamples-r4: Bundle.entry[6].resource.component[1].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#p.Gln472His)
Bundle/oncologyexamples-r4: Bundle.entry[7].resource.component[0].value.ofType(CodeableConcept)errorNone of the codes provided are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs, and a code from this value set is required) (codes = http://varnomen.hgvs.org#2:g.212578380del)
Bundle/oncologyexamples-r4: Bundle.entry[12].resource.hasMember[3]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/grouper
Bundle/oncologyexamples-r4: Bundle.entry[12].resource.hasMember[4]informationThis element does not match any known slice for the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/grouper

C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\report-CYP2C19.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\sequence-phase-relation-CYP2C19.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\servicerequest-hla-a-r4.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\examples\specimen-hla-r4.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\codesystem-tbd-codes.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\conceptmap-dna-change-type.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\vocabulary\valueset-tbd-codes.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\resources\diagnosticreport-profile-spreadsheet.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\resources\medicationstatement-profile-spreadsheet.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\resources\observation-profile-spreadsheet.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\resources\servicerequest-profile-spreadsheet.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\resources\specimen-profile-spreadsheet.xml

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C:\Users\lynn\Documents\GitHub\hl7.fhir.uv.genomics-reporting#1.0.0\src\resources\task-profile-spreadsheet.xml

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