This page is part of the Genetic Reporting Implementation Guide (v2.0.0: STU 2) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions
Defining URL: | http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/coded-annotation |
Version: | 2.0.0 |
Name: | CodedAnnotation |
Title: | Coded Annotation |
Status: | Active as of 2022-05-09 04:53:07+0000 |
Definition: | Annotation DataType with added CodeableConcept extension element |
Publisher: | HL7 Clinical Genomics Working Group |
Source Resource: | XML / JSON / Turtle |
The official URL for this profile is:
http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/coded-annotation
This profile adds a CodeableConcept extension to the Annotation data type. The Annotation data type is meant to capture text notes plus information about who made the statement and when. This new extension gives a coded meaning (e.g. test disclaimer, tumor board preparation note) to the notes. Many notes will not require this code, so this extension is optional. It can be used when implementers feel the meaning is important.
If there is a possibility of transporting the content of the note in a structured manner the usage of CodedAnnotation is forbidden and the corresponding data structures SHALL be used. For example, if the text to send resembles the interpretation or impression of the Observation, this guide adds Observation.component
slice for conclusion-string
which is more appropriate than a note. This would include text like interpretative information (typically canned) about a variant identified in the patient. This slice is defined in the Genomics Base profile, which every observation builds upon. Therefore, this component is a defined slice on all observations profiles defined in this Implementation Guide.
Description of Profiles, Differentials, Snapshots and how the different presentations work.
This structure is derived from Annotation
This structure is derived from Annotation
Name | Flags | Card. | Type | Description & Constraints |
---|---|---|---|---|
Annotation | 0..* | Annotation | Text node with attribution | |
annotation-code | 0..1 | CodeableConcept | Annotation Code URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/annotation-code Binding: Coded Annotation Types (example) | |
Documentation for this format |
Name | Flags | Card. | Type | Description & Constraints |
---|---|---|---|---|
Annotation | 0..* | Annotation | Text node with attribution | |
id | 0..1 | string | Unique id for inter-element referencing | |
Slices for extension | 0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |
annotation-code | 0..1 | CodeableConcept | Annotation Code URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/annotation-code Binding: Coded Annotation Types (example) | |
author[x] | Σ | 0..1 | Individual responsible for the annotation | |
authorReference | Reference(Practitioner | Patient | RelatedPerson | Organization) | |||
authorString | string | |||
time | Σ | 0..1 | dateTime | When the annotation was made |
text | Σ | 1..1 | markdown | The annotation - text content (as markdown) |
Documentation for this format |
Name | Flags | Card. | Type | Description & Constraints |
---|---|---|---|---|
Annotation | 0..* | Annotation | Text node with attribution | |
Documentation for this format |
This structure is derived from Annotation
Differential View
This structure is derived from Annotation
Name | Flags | Card. | Type | Description & Constraints |
---|---|---|---|---|
Annotation | 0..* | Annotation | Text node with attribution | |
annotation-code | 0..1 | CodeableConcept | Annotation Code URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/annotation-code Binding: Coded Annotation Types (example) | |
Documentation for this format |
Snapshot View
Name | Flags | Card. | Type | Description & Constraints |
---|---|---|---|---|
Annotation | 0..* | Annotation | Text node with attribution | |
id | 0..1 | string | Unique id for inter-element referencing | |
Slices for extension | 0..* | Extension | Additional content defined by implementations Slice: Unordered, Open by value:url | |
annotation-code | 0..1 | CodeableConcept | Annotation Code URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/annotation-code Binding: Coded Annotation Types (example) | |
author[x] | Σ | 0..1 | Individual responsible for the annotation | |
authorReference | Reference(Practitioner | Patient | RelatedPerson | Organization) | |||
authorString | string | |||
time | Σ | 0..1 | dateTime | When the annotation was made |
text | Σ | 1..1 | markdown | The annotation - text content (as markdown) |
Documentation for this format |
Other representations of profile: CSV, Excel, Schematron
Id | Grade | Path | Details | Requirements |
ele-1 | error | Annotation | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ele-1 | error | Annotation.extension | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ext-1 | error | Annotation.extension | Must have either extensions or value[x], not both : extension.exists() != value.exists() | |
ele-1 | error | Annotation.extension:code | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ext-1 | error | Annotation.extension:code | Must have either extensions or value[x], not both : extension.exists() != value.exists() | |
ele-1 | error | Annotation.author[x] | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ele-1 | error | Annotation.time | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) | |
ele-1 | error | Annotation.text | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) |