Validation Results for GenomicsReporting

Generated Mon May 09 16:58:00 UTC 2022, FHIR version 4.0.1 for hl7.fhir.uv.genomics-reporting#2.0.0 (canonical = http://hl7.org/fhir/uv/genomics-reporting (history)). See Errors Only

Quality Checks
Publisher Version:	IG Publisher Version: v1.1.118
Publication Code:	genomics-reporting . PackageId = hl7.fhir.uv.genomics-reporting, Canonical = http://hl7.org/fhir/uv/genomics-reporting
Realm Check for UV:	n/a
Version Check:	2.0.0 = ok. Step trial-use in sequence STU 2, to be published at http://hl7.org/fhir/uv/genomics-reporting/STU2 (subdir = STU2)
Supressed Messages:	97 Suppressed Issues
Dependency Checks:	Package Version FHIR Release Canonical Web Base Comment hl7.fhir.uv.genomics-reporting 2.0.0 4.0.1 http://hl7.org/fhir/uv/genomics-reporting Templates: hl7.fhir.template#0.3.3 -> hl7.base.template#0.3.2 -> fhir.base.template#0.2.2
Publication Rules:	Code = genomics-reporting. All OK (path - http://hl7.org/fhir/uv/genomics-reporting/STU2) The copyrightYear parameter ('2022+') in the IG resource is good
HTA Analysis:	All OK
R5 Dependencies:	(none)
Previous Version Comparison:	Comparison with version 1.1.0
Summary:	broken links = 0, errors = 0, warn = 0, info = 0

n/a Show Validation Information

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-CG-IG-HLA-FullBundle-01.json Show Validation Information (80)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-CYP2C19.json Show Validation Information (763)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-cgexample.json Show Validation Information (105)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-cgexample-withGrouping.json Show Validation Information (116)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-complexVariant-nonHGVS.json Show Validation Information (7)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-compound-heterozygote.json Show Validation Information (7)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-oncology-diagnostic.json Show Validation Information (27)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-oncology-report-example.json Show Validation Information (29)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-oncologyexamples-r4.json Show Validation Information (97)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-oncologyexamples-r4-withGrouping.json Show Validation Information (113)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-pgxexample.json Show Validation Information (74)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Bundle-bundle-sequence-phase-relation-CYP2C19.json Show Validation Information (33)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\CodeSystem-clinvar-evidence-level-custom-cs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\CodeSystem-coded-annotation-types-cs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\CodeSystem-pharmgkb-evidence-level-custom-cs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\CodeSystem-sequence-phase-relationship-cs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\CodeSystem-tbd-codes-cs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\CodeSystem-variant-confidence-status-cs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ConceptMap-dna-change-type-map.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\DiagnosticReport-GenomicsReportExample01.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\DiagnosticReport-PGxGenomicsReportEMERGE.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\DiagnosticReport-PGxGenomicsReportEMERGE-withGrouping.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\DiagnosticReport-diagnosticreport-hla-glstring-r4.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\DocumentReference-VCFFile.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\MedicationStatement-MedicationStatementWarfarin.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-AnnotationExample.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-ExampleGermlineCNV.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-ExampleGermlineDEL.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-ExampleGermlineINV.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-ExampleSomaticCNV.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-ExampleSomaticDEL.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-ExampleSomaticINV.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Genotype-Clinical-Trial-Example-using-haplotypes.json Show Validation Information (4)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-GenotypeExample1.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-GenotypeExamplePharmVar.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-GrouperEx01.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-GrouperEx02.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-GrouperEx03.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-HaplotypeExamplePharmVar01.json Show Validation Information (3)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-HaplotypeExamplePharmVar02.json Show Validation Information (3)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-HaplotypeSet-Clinical-Trial-Example-1of2.json Show Validation Information (3)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-HaplotypeSet-Clinical-Trial-Example-2of2.json Show Validation Information (3)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-MicrosatelliteInstabilityExample01.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-OverallInterpExample1.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-OverallInterpExample2.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-geno-1001.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-geno-1002.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-geno-1003.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1011.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1012.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1013.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1014.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1015.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1016.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1017.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1018.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1019.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1020.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Pgx-var-1021.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-PolyGenicDiagnosticImpExample.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-RegionStudiedPGx1.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-RegionStudiedPGx2.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-RegionStudiedPGx3.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-SNVexample.json Show Validation Information (4)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-SequencePhaseRelationExample1.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Therapeutic-Implication-Clinical-Trial-2.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Therapeutic-Implication-Clinical-Trial-Somatic.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-TherapeuticImplicationExample1.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-TumorMutationBurdenExample01.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-TxImp01.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-TxImp02.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-TxImp03.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-TxImp04.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-TxImp05.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-TxImp06.json Show Validation Information (9)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-Variant-Somatic-Clinical-Trial.json Show Validation Information (4)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-VariantExample1.json Show Validation Information (3)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-VariantExample2.json Show Validation Information (4)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-genotype-hla-a-glstring-r4.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-haplotype-hla-a-1-r4.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Observation-obs-idh-ex.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\OperationDefinition-find-subject-variants.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Organization-ExampleLab.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Organization-ExampleOrg.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Patient-CGPatientExample01.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Patient-ExamplePatient.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\RiskAssessment-GenRiskDiabetesT2.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ServiceRequest-ExampleServiceRequest.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ServiceRequest-GenomicsServiceRequestExample01.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ServiceRequest-eMERGEServiceRequest.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ServiceRequest-servicerequest-hla-a-r4.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Specimen-ExampleSpecimen.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Specimen-GenomicSpecimenExample01.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Specimen-GenomicSpecimenExample02.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Specimen-specimen-hla-r4.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-annotation-code.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-coded-annotation.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-diagnostic-implication.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-finding.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-followup-recommendation.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-genomic-report-note.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-genomics-artifact.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-genomics-base.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-genomics-document-reference.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-genomics-file.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-genomics-report.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-genomics-risk-assessment.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-genotype.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-haplotype.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-implication.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-medication-assessed.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-medication-recommendation.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-msi.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-overall-interpretation.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-recommended-action.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-region-studied.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-sequence-phase-relationship.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-therapeutic-implication.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-therapy-assessed.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-tmb.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\StructureDefinition-variant.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Task-MedicationRecommendationExample1.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Task-PGxRecEx01.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Task-PGxRecEx02.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Task-PGxRecEx03.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Task-PGxRecEx04.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\Task-PGxRecEx05.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-coded-annotation-types-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-condition-inheritance-mode-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-dna-change-type-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-evidence-level-example-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-functional-effect-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-genetic-therapeutic-implications-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-hgnc-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-hgvs-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-high-low-codes-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-molecular-consequence-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-sequence-phase-relationship-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-tbd-codes-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-variant-confidence-status-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ValueSet-variant-inheritance-vs.json Show Validation Information (1)

C:\temp\hl7.fhir.uv.genomics-reporting#2.0.0\fsh-generated\resources\ImplementationGuide-genomics-reporting.json Show Validation Information (0)

Suppressed Messages (Warnings, hints, broken links)

CodeSystems not supported yet

• Code System URI 'http://clinicaltrials.gov/' is unknown so the code cannot be validated (8 uses)
• Code System URI 'http://glstring.org' is unknown so the code cannot be validated (16 uses)
• Code System URI 'http://hpo.jax.org/app/' is unknown so the code cannot be validated (4 uses)
• Code System URI 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' is unknown so the code cannot be validated (12 uses)
• Code System URI 'http://ncimeta.nci.nih.gov' is unknown so the code cannot be validated (36 uses)
• Code System URI 'http://sequenceontology.org' is unknown so the code cannot be validated (164 uses)
• Code System URI 'http://www.ebi.ac.uk/ipd/imgt/hla' is unknown so the code cannot be validated (88 uses)
• Code System URI 'http://www.genenames.org/geneId' is unknown so the code cannot be validated (284 uses)
• Code System URI 'http://www.ncbi.nlm.nih.gov/clinvar' is unknown so the code cannot be validated (52 uses)
• Code System URI 'http://www.ncbi.nlm.nih.gov/gtr' is unknown so the code cannot be validated (36 uses)
• Code System URI 'http://www.ncbi.nlm.nih.gov/medgen' is unknown so the code cannot be validated (12 uses)
• Code System URI 'http://www.ncbi.nlm.nih.gov/nuccore' is unknown so the code cannot be validated (384 uses)
• Code System URI 'http://www.ncbi.nlm.nih.gov/projects/SNP' is unknown so the code cannot be validated (24 uses)
• Code System URI 'http://www.ncbi.nlm.nih.gov/refseq' is unknown so the code cannot be validated (92 uses)
• Code System URI 'http://www.omim.org' is unknown so the code cannot be validated (4 uses)
• Code System URI 'http://www.orpha.net' is unknown so the code cannot be validated (4 uses)
• Code System URI 'http://www.pharmvar.org' is unknown so the code cannot be validated (44 uses)
• Code System URI 'https://hgsc.bcm.edu/lab-test-codes/' is unknown so the code cannot be validated (12 uses)
• Error from server: Unable to provide support for code system http://sequenceontology.org (12 uses)
• Error from server: Unable to provide support for code system http://www.ebi.ac.uk/ols/ontologies/geno (4 uses)
• Error from server: Unable to provide support for code system http://www.genenames.org/geneId (4 uses)
• Unknown System specified, so Concepts and Filters can''t be checked (12 uses)

Each of these reference MolecularSequence. Our profiles limit Observation.derivedFrom() to other profiles, but in HLA use cases, they use it to reference to MolecularSequence. The group has decided we can allow MolecularSequence, but we do not want to update our slicing as this is more of an edge case, versus the typical case of referring to our other profiles.

• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[10].resource.ofType(Observation).derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[10].resource.ofType(Observation).derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[16].resource.ofType(Observation).derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[16].resource.ofType(Observation).derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[17].resource.ofType(Observation).derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[17].resource.ofType(Observation).derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[23].resource.ofType(Observation).derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[23].resource.ofType(Observation).derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[24].resource.ofType(Observation).derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[24].resource.ofType(Observation).derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[9].resource.ofType(Observation).derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[9].resource.ofType(Observation).derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)
• INFORMATION: Observation/genotype-hla-a-glstring-r4: Observation.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype (4 uses)
• INFORMATION: Observation/genotype-hla-a-glstring-r4: Observation.derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype (4 uses)
• INFORMATION: Observation/haplotype-hla-a-1-r4: Observation.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (4 uses)

Misc information messages

• The repeating element has a pattern. The pattern will apply to all the repeats (this has not been clear to all users) (56 uses)
• The string value contains text that looks like embedded HTML tags. If this content is rendered to HTML without appropriate post-processing, it may be a security risk (0 uses)

Suppress Process Info messages

• Validate resource against profile http://hl7.org/fhir/StructureDefinition/Bundle (48 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/CodeSystem (24 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/ConceptMap (4 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/DiagnosticReport (40 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/ImplementationGuide (4 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/MedicationStatement (8 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/MolecularSequence (56 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/Observation (656 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/OperationDefinition (4 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/Organization (32 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/Patient (40 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/Practitioner (12 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/ServiceRequest (32 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/Specimen (48 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/StructureDefinition (104 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/Task (12 uses)
• Validate resource against profile http://hl7.org/fhir/StructureDefinition/ValueSet (56 uses)
• Validate resource against profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication (12 uses)
• Validate resource against profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (16 uses)
• Validate resource against profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype (28 uses)
• Validate resource against profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype (20 uses)
• Validate resource against profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant (84 uses)

ValueSets not recognized yet because of unrecognized CodeSystems

• [Unable to determine whether the provided codes are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/condition-inheritance-mode-vs because the value set or a code system it depends on is not known to the validator, Code System URI 'http://hpo.jax.org/app/' is unknown so the code cannot be validated] (4 uses)
• [Unable to determine whether the provided codes are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/dna-change-type-vs because the value set or a code system it depends on is not known to the validator, Code System URI 'http://sequenceontology.org' is unknown so the code cannot be validated] (116 uses)
• [Unable to determine whether the provided codes are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgnc-vs because the value set or a code system it depends on is not known to the validator, Code System URI 'http://www.genenames.org/geneId' is unknown so the code cannot be validated] (272 uses)
• [Unable to determine whether the provided codes are in the value set http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-consequence-vs because the value set or a code system it depends on is not known to the validator, Code System URI 'http://sequenceontology.org' is unknown so the code cannot be validated] (48 uses)

additional component details that can be shared with a variant (we will likely provide better guidance for this in the future, but this is OK for now) (details about an array variant, and representing a complex variant)

• INFORMATION: Bundle/bundle-cgexample-withGrouping: Bundle.entry[6].resource.ofType(Observation).component[19]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant (4 uses)
• INFORMATION: Bundle/bundle-cgexample-withGrouping: Bundle.entry[6].resource.ofType(Observation).component[20]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant (4 uses)
• INFORMATION: Bundle/bundle-cgexample-withGrouping: Bundle.entry[8].resource.ofType(Observation).component[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant (4 uses)
• INFORMATION: Bundle/bundle-cgexample: Bundle.entry[6].resource.ofType(Observation).component[19]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant (4 uses)
• INFORMATION: Bundle/bundle-cgexample: Bundle.entry[6].resource.ofType(Observation).component[20]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant (4 uses)
• INFORMATION: Bundle/bundle-cgexample: Bundle.entry[8].resource.ofType(Observation).component[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant (4 uses)

example of using DiagnosticImplication.derivedFrom as logical references

• INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication (4 uses)
• INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication (4 uses)
• INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[2]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication (4 uses)
• INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[3]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication (4 uses)
• INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[4]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication (4 uses)
• INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[5]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication (4 uses)
• INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[6]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication (4 uses)

example other Observations, which is acceptable. Examples include panels which shows some additional grouping of other observations, other genomics related observations that do not have profiles.

• INFORMATION: Bundle/bundle-cgexample-withGrouping: Bundle.entry[0].resource.ofType(DiagnosticReport).result[5]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource.ofType(DiagnosticReport).result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource.ofType(DiagnosticReport).result[4]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource.ofType(DiagnosticReport).result[5]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource.ofType(DiagnosticReport).result[6]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: Bundle/bundle-oncologyexamples-r4: Bundle.entry[13].resource.ofType(DiagnosticReport).result[3]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: Bundle/bundle-oncologyexamples-r4: Bundle.entry[13].resource.ofType(DiagnosticReport).result[4]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: DiagnosticReport/PGxGenomicsReportEMERGE-withGrouping: DiagnosticReport.result[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: DiagnosticReport/PGxGenomicsReportEMERGE-withGrouping: DiagnosticReport.result[2]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: DiagnosticReport/PGxGenomicsReportEMERGE-withGrouping: DiagnosticReport.result[3]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.result[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: DiagnosticReport/diagnosticreport-hla-glstring-r4: DiagnosticReport.result[2]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)

the IG Validator returns different warnings on this error: https://github.com/HL7/fhir-ig-publisher/issues/420

• Found multiple matching profiles for Task/med-usage-impact-task-pgx-example among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation, http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-recommendation (4 uses)
• Found multiple matching profiles for Task/med-usage-impact-task-pgx-example among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-recommendation, http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation (0 uses)
• Found multiple matching profiles for Task/usage-1a among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation, http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-recommendation (4 uses)
• Found multiple matching profiles for Task/usage-1a among choices: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medication-recommendation, http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/followup-recommendation (0 uses)

these use an R4 Core extension that exists for HLA

• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[26].resource.ofType(DiagnosticReport).extension[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)
• INFORMATION: Bundle/bundle-CG-IG-HLA-FullBundle-01: Bundle.entry[26].resource.ofType(DiagnosticReport).extension[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-report (4 uses)

Errors sorted by type