Genomics Reporting Implementation Guide
2.0.0 - trial-use

This page is part of the Genetic Reporting Implementation Guide (v2.0.0: STU 2) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

: VCFFile - XML Representation

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<DocumentReference xmlns="http://hl7.org/fhir">
  <id value="VCFFile"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomics-document-reference"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative</b></p><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource "VCFFile" </p><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-genomics-document-reference.html">Genomics DocumentReference</a></p></div><p><b>status</b>: current</p><p><b>subject</b>: <a href="Patient-CGPatientExample01.html">Patient/CGPatientExample01</a> " EVERYMAN"</p><p><b>description</b>: ... details about how this VCF was generated ...</p><blockquote><p><b>content</b></p></blockquote><h3>Contexts</h3><table class="grid"><tr><td>-</td><td><b>Related</b></td></tr><tr><td>*</td><td><a href="DiagnosticReport-PGxGenomicsReportEMERGE.html">DiagnosticReport/PGxGenomicsReportEMERGE</a></td></tr></table></div>
  </text>
  <status value="current"/>
  <subject>
    <reference value="Patient/CGPatientExample01"/>
  </subject>
  <description value="... details about how this VCF was generated ..."/>
  <content>
    <attachment>
      <url
           value="http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/ALL.chr1.phase3_shapeit2_mvncall_integrated_v5b.20130502.genotypes.vcf.gz"/>
    </attachment>
  </content>
  <context>
    <related>
      <reference value="DiagnosticReport/PGxGenomicsReportEMERGE"/>
    </related>
  </context>
</DocumentReference>