Genomics Reporting Implementation Guide
1.1.0 - Ballot

This page is part of the Genetic Reporting Implementation Guide (v1.1.0: STU 2 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Example Bundle: Example - Melanoma implication

Bundle oncology-diagnostic of type transaction

Entry 1 - Full URL = urn:uuid:d0b4affa-91d6-46d1-af01-b30d9f16ef6d

Request:

POST Patient

Resource Patient:

Carrot John Mr Male 1962-12-31 ( id: 1007)

Entry 2 - Full URL = urn:uuid:a48256f8-db37-44e0-a0f6-d7af16c7c9ef

Request:

POST Practitioner

Resource Practitioner:

Generated Narrative

Texts

-
*

identifier: id: 4654765876

name: Akerman Philip Prof

address: Castro Valley CA

Entry 3 - Full URL = urn:uuid:a5d6a6a9-4859-480e-85b2-56974fef3b9d

Request:

POST Specimen

Resource Specimen:

Generated Narrative

Texts

-
*

identifier: id: 076e1948-2217-11e9-94d8-12e241dc1f66

status: AVAILABLE

subject: Generated Summary: type: transaction

Collections

-Collector
*Generated Summary: type: transaction

Entry 4 - Full URL = urn:uuid:40e85eda-4d31-4bd2-a5a0-c39d63f9824f

Request:

POST Observation

Resource Observation:

Generated Narrative

Texts

-
*

code: Tumor Mutational Burden

subject: Generated Summary: type: transaction

performer: Generated Summary: type: transaction

value: 25.0 Mutations/Megabase

specimen: Generated Summary: type: transaction

Entry 5 - Full URL = urn:uuid:16fdd5fc-e665-48af-99e4-48d603f3e12d

Request:

POST Observation

Resource Observation:

Generated Narrative

Texts

-
*

category: Laboratory

code: Genetic variant assessment

subject: Generated Summary: type: transaction

performer: Generated Summary: type: transaction

value: Present

method: Sequencing

specimen: Generated Summary: type: transaction

component

code: Human reference sequence assembly version

value: GRCh37

component

code: Genomic DNA change (gHGVS)

value: NC_000007.13:g.140453136A>T

component

code: Discrete genetic variant

value: Clinvar ID 13961

component

code: Amino acid change (pHGVS)

value: p.Val600Glu

component

code: Amino acid change type

value: Missense

component

code: Gene studied ID

value: BRAF

Entry 6 - Full URL = urn:uuid:1bf9642d-fd1c-4819-8c5d-44fae4bad524

Request:

POST Observation

Resource Observation:

Generated Narrative

Texts

-
*

Related Artifact:

Exception generating Narrative: type org.hl7.fhir.r5.model.RelatedArtifact not handled - should not be here

Entry 7 - Full URL = urn:uuid:ad7a499b-a43b-4cc8-bf46-cac62d9ecae5

Request:

POST DiagnosticReport

Resource DiagnosticReport:

Exception generating narrative: null