| Quality Checks |
| Publisher Version: | IG Publisher Version: v1.5.0 |
| Publication Code: | mcode . PackageId = hl7.fhir.us.mcode, Canonical = http://hl7.org/fhir/us/mcode |
| Realm Check for US: | Snomed: The IG specifies a different version (http://snomed.info/sct/900000000000207008/version/20230901) to the US edition of SNOMED CT version in the parameters (http://snomed.info/sct/731000124108) 25 Profiles not based on US Core |
| Publication Request: |
| package-id | hl7.fhir.us.mcode |
| version | 3.0.0 |
| path | http://hl7.org/fhir/us/mcode/STU3 |
| Pub-Mode | milestone |
| status | trial-use |
| sequence | STU 3 |
| desc | STU3 Release |
| descmd | STU3 Release
|
| changes | change_log.html |
Proposed path for this milestone publication should usually be canonical with either sequence or version appended  |
| Supressed Messages: | 66 Suppressed Issues
|
| Dependency Checks: | | Package | Version | FHIR | Canonical | Web Base | Comment |
|---|
  hl7.fhir.us.mcode | 3.0.0 | R4 | http://hl7.org/fhir/us/mcode | | |
 hl7.terminology.r4 | 5.3.0 M | R4 | http://terminology.hl7.org | http://terminology.hl7.org/5.3.0 | |
| hl7.fhir.us.core | 5.0.1 O | R4 | http://hl7.org/fhir/us/core | http://hl7.org/fhir/us/core/STU5.0.1 | Latest Release is 6.1.0 |
 hl7.terminology.r4 | 3.1.0 O | R4 | http://terminology.hl7.org | http://terminology.hl7.org/3.1.0 | Latest Release is 5.3.0 |
| hl7.fhir.uv.bulkdata | 2.0.0 M | R4 | http://hl7.org/fhir/uv/bulkdata | http://hl7.org/fhir/uv/bulkdata/STU2 | |
| hl7.fhir.uv.smart-app-launch | 2.0.0 O | R4 | http://hl7.org/fhir/smart-app-launch | http://hl7.org/fhir/smart-app-launch/STU2 | Latest Release is 2.1.0 |
| us.nlm.vsac | 0.7.0 O | R4 | http://fhir.org/packages/us.nlm.vsac | http://fhir.org/packages/us.nlm.vsac | Latest Release is 0.13.0 |
 hl7.fhir.uv.sdc | 3.0.0 M | R4 | http://hl7.org/fhir/uv/sdc | http://hl7.org/fhir/uv/sdc/STU3 | |
 hl7.fhir.r4.examples | 4.0.1 O | R4 | http://hl7.org/fhir | http://hl7.org/fhir/R4 | Latest Release is 5.0.0 |
| hl7.fhir.uv.genomics-reporting | 2.0.0 M | R4 | http://hl7.org/fhir/uv/genomics-reporting | http://hl7.org/fhir/uv/genomics-reporting/STU2 | |
| hl7.fhir.uv.extensions | 5.1.0-cibuild V | R5 | http://hl7.org/fhir/extensions | https://build.fhir.org/ig/HL7/fhir-extensions/ | FHIR Version Mismatch |
| hl7.terminology.r5 | 5.3.0 M | R5 | http://terminology.hl7.org | http://terminology.hl7.org/5.3.0 | FHIR Version Mismatch |
Templates: hl7.fhir.us.mcode.ig-template#0.1.0 -> hl7.fhir.template#current -> hl7.base.template#current -> fhir.base.template#current. Tools: current |
| Dependent IGs: | no references |
| Global Profiles: | (none declared) |
| HTA Analysis: | All OK |
| R5 Dependencies: | (none) |
| Draft Dependencies: |
-
hl7.fhir.r4.core#4.0.1: GuideParameterCode
(15 uses), observation-bodyweight
(3 uses),
code
(8 uses), observation-bodyheight
(1 uses), Organization
(39 uses), CommonLanguages
(37 uses), CarePlan
(30 uses), DeviceRequest
(22 uses), ImmunizationRecommendation
(24 uses), MedicationRequest
(26 uses), NutritionOrder
(23 uses), ServiceRequest
(31 uses), MedicationAdministration
(27 uses), MedicationDispense
(22 uses), MedicationStatement
(22 uses), Procedure
(29 uses), Immunization
(22 uses), ImagingStudy
(47 uses), ObservationCategoryCodes
(29 uses), LOINCCodes
(71 uses), Encounter
(30 uses), SNOMEDCTBodyStructures
(26 uses), ObservationMethods
(7 uses), Specimen
(23 uses), Device
(34 uses), DeviceMetric
(24 uses), ObservationReferenceRangeMeaningCodes
(24 uses), ObservationReferenceRangeAppliesToCodes
(24 uses), QuestionnaireResponse
(49 uses), MolecularSequence
(49 uses), DocumentReference
(26 uses), Media
(25 uses), Practitioner
(41 uses), PractitionerRole
(41 uses), RelatedPerson
(37 uses), MedicationAdministration Status Codes
(1 uses), MedicationAdministration Category Codes
(1 uses), Medication
(3 uses), EpisodeOfCare
(1 uses), MedicationAdministration Performer Function Codes
(1 uses), SNOMEDCTAnatomicalStructureForAdministrationSiteCodes
(2 uses), SNOMEDCTRouteCodes
(2 uses), SNOMEDCTAdministrationMethodCodes
(2 uses), Provenance
(2 uses), medicationrequest Status
(1 uses), medicationRequest Intent
(1 uses), medicationRequest Category Codes
(2 uses), RequestPriority
(1 uses), CareTeam
(26 uses), ProcedurePerformerRoleCodes
(3 uses), medicationRequest Course of Therapy Codes
(1 uses), Coverage
(1 uses), ClaimResponse
(1 uses), SNOMEDCTAdditionalDosageInstructions
(1 uses), SNOMEDCTMedicationAsNeededReasonCodes
(1 uses), DoseAndRateType
(1 uses), DetectedIssue
(1 uses), PlanDefinition
(2 uses), ActivityDefinition
(2 uses), Measure
(2 uses), Questionnaire
(2 uses), EventStatus
(2 uses), ProcedureCategoryCodes(SNOMEDCT)
(2 uses), Location
(3 uses), ProcedureOutcomeCodes(SNOMEDCT)
(2 uses), DiagnosticReport
(3 uses), Composition
(2 uses), Condition/Problem/DiagnosisCodes
(2 uses), Condition
(14 uses), ProcedureFollowUpCodes(SNOMEDCT)
(2 uses), ProcedureDeviceActionCodes
(2 uses), Substance
(4 uses), FHIRDeviceTypes
(2 uses), DiagnosticReportStatus
(1 uses), DiagnosticServiceSectionCodes
(2 uses), LOINCDiagnosticReportCodes
(1 uses), SNOMEDCTClinicalFindings
(1 uses), Group
(3 uses), SpecimenStatus
(1 uses), FHIRSpecimenCollectionMethod
(1 uses), SpecimenProcessingProcedure
(1 uses), SpecimenContainerType
(1 uses), GroupType
(1 uses), ConditionClinicalStatusCodes
(2 uses), ConditionVerificationStatus
(2 uses), ConditionCategoryCodes
(4 uses), Condition/DiagnosisSeverity
(2 uses), ConditionStage
(2 uses), BodyStructure
(2 uses), ClinicalImpression
(1 uses), ConditionStageType
(1 uses)
-
hl7.fhir.uv.extensions#5.1.0-cibuild: TypeMustSupport
(34 uses)
-
hl7.fhir.uv.tools#1.0.0-candidate: ResourceSortExt
(284 uses)
-
hl7.terminology.r5#5.3.0: ObservationCategoryCodes
(85 uses), ConditionVerificationStatus
(11 uses), ConditionCategoryCodes
(11 uses), ProvenanceParticipantType
(11 uses), MedicationRequestCategoryCodes
(11 uses), ObservationReferenceRangeMeaningCodes
(2 uses), OrganizationType
(3 uses), UsageContextType
(1 uses)
|
| Modifier Extensions: | (none) |
| Previous Version Comparison: | |
| IPA Comparison: | n/a |
| Summary: | errors = 17, warn = 0, info = 0, broken links = 0 |
| Path | Severity | Message |
| Bundle.entry[6].resource/*Observation/gx-genomic-variant-somatic-bap1-indel*/.component[2].value.ofType(CodeableConcept) (l405/c14) | error | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_004656.4:c.1768C>T) |
| Bundle.entry[6].resource/*Observation/gx-genomic-variant-somatic-bap1-indel*/.component[3].value.ofType(CodeableConcept) (l424/c14) | error | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NP_004647.1:p.(Gln590Ter)) |
| Bundle.entry[12].resource/*Observation/gx-genomic-variant-somatic-pof1b*/.component[4].value.ofType(CodeableConcept) (l1362/c14) | error | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_001307940.2:c.430C>T) |
| Bundle.entry[12].resource/*Observation/gx-genomic-variant-somatic-pof1b*/.component[5].value.ofType(CodeableConcept) (l1381/c14) | error | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NP_001294869.1:p.(Pro144Ser)) |
| Bundle.entry[13].resource/*Observation/gx-genomic-variant-somatic-polrmt*/.component[4].value.ofType(CodeableConcept) (l1571/c14) | error | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_005035.4:c.598G>A) |
| Bundle.entry[13].resource/*Observation/gx-genomic-variant-somatic-polrmt*/.component[5].value.ofType(CodeableConcept) (l1590/c14) | error | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NP_005026.3:p.(Gly200Arg)) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Bundle-gx-genomic-bundle-adam-anyperson.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_004656.4:c.1768C>T) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Bundle-gx-genomic-bundle-adam-anyperson.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NP_004647.1:p.(Gln590Ter)) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Bundle-gx-genomic-bundle-adam-anyperson.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_001307940.2:c.430C>T) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Bundle-gx-genomic-bundle-adam-anyperson.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NP_001294869.1:p.(Pro144Ser)) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Bundle-gx-genomic-bundle-adam-anyperson.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_005035.4:c.598G>A) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Bundle-gx-genomic-bundle-adam-anyperson.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NP_005026.3:p.(Gly200Arg)) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Bundle-mcode-patient-bundle-jenny-m.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NC_000016.10:g.23603471G>T) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Observation-genomic-variant-fusion.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_005157.6(ABL1):c.1076T>G) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Observation-genomic-variant-germline-deletion.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NG_005905.2:g.126148_126152del) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Observation-genomic-variant-jenny-m.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NC_000016.10:g.23603471G>T) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Observation-genomic-variant-somatic-single-nucleotide.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_000455.5:c.725G>A) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Observation-gx-genomic-variant-somatic-bap1-indel.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_004656.4:c.1768C>T) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Observation-gx-genomic-variant-somatic-bap1-indel.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NP_004647.1:p.(Gln590Ter)) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Observation-gx-genomic-variant-somatic-pof1b.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_001307940.2:c.430C>T) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Observation-gx-genomic-variant-somatic-pof1b.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NP_001294869.1:p.(Pro144Ser)) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Observation-gx-genomic-variant-somatic-polrmt.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NM_005035.4:c.598G>A) |
| C:\temp\hl7.fhir.us.mcode#3.0.0-milestone\fsh-generated\resources\Observation-gx-genomic-variant-somatic-polrmt.json | None of the codings provided are in the value set 'Human Genome Variation Society (HGVS) Nomenclature' (http://hl7.org/fhir/uv/genomics-reporting/ValueSet/hgvs-vs|2.0.0), and a coding from this value set is required) (codes = http://varnomen.hgvs.org#NP_005026.3:p.(Gly200Arg)) |