minimal Common Oncology Data Elements (mCODE) Implementation Guide
4.0.0 - STU4 United States of America flag

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v4.0.0: STU4) based on FHIR (HL7® FHIR® Standard) R4. This is the current published version. For a full list of available versions, see the Directory of published versions

Example Observation: genomic-variant-jenny-m

Generated Narrative: Observation genomic-variant-jenny-m

status: Final

category: Laboratory

code: Genetic variant assessment

subject: Jenny M Female, DoB: 1965-01-01 ( Medical Record Number: MRN1234 (use: usual, ))

effective: 2018-03-15

performer: Practitioner Owen Oncologist

value: Present

method: Sequencing

component

code: Gene studied [ID]

value: PALB2

component

code: Discrete genetic variant

value: NM_024675.3(PALB2):c.3549C>A (p.Tyr1183Ter)

component

code: Genomic DNA change (gHGVS)

value: NC_000016.10:g.23603471G>T

component

code: Genomic source class [Type]

value: Somatic