minimal Common Oncology Data Elements (mCODE) Implementation Guide
3.0.0 - STU3 Release United States of America flag

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v3.0.0: STU 3) based on FHIR R4. This is the current published version. For a full list of available versions, see the Directory of published versions

Example Observation: genomic-variant-fusion

Generated Narrative: Observation

Resource Observation "genomic-variant-fusion"

Profile: Genomic Variant Profile

status: final

category: Laboratory (Observation Category Codes#laboratory)

code: 69548-6 (LOINC#69548-6)

subject: Patient/cancer-patient-john-anyperson " ANYPERSON"

effective: 2019-04-01

performer: Practitioner/us-core-practitioner-owen-oncologist " ONCOLOGIST"

value: Present (LOINC#LA9633-4)

interpretation: Positive (qualifier value) (SNOMED CT#10828004)

method: Sequencing (LOINC#LA26398-0)

component

code: 48018-6 (LOINC#48018-6)

value: BCR (HUGO Gene Nomenclature Committee Genes#HGNC:1014)

component

code: 48018-6 (LOINC#48018-6)

value: ABL1 (HUGO Gene Nomenclature Committee Genes#HGNC:76)

component

code: 81290-9 (LOINC#81290-9)

value: NM_005157.6(ABL1):c.1076T>G (Human Genome Variation Society nomenclature#NM_005157.6(ABL1):c.1076T>G)

component

code: 48002-0 (LOINC#48002-0)

value: Somatic (LOINC#LA6684-0)