Genomics Reporting Implementation Guide
3.0.0-ballot - Ballot International flag

This page is part of the Genetic Reporting Implementation Guide (v3.0.0-ballot: STU 3 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. The current version which supersedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Extension: Genomic Study Analysis Input

Official URL: http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input Version: 3.0.0-ballot
Active as of 2023-12-18 Computable Name: GenomicStudyAnalysisInput

Genomic Study Analysis Input

Context of Use

This extension may be used on the following element(s):

  • Element ID Procedure

Usage info

Usage:

Formal Views of Extension Content

Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.

This structure is derived from Extension

Summary

Complex Extension: Genomic Study Analysis Input

  • file: Reference: An Extension
  • type: CodeableConcept: An Extension
  • generatedBy: Identifier, Reference: An Extension

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraintsdoco
.. Extension 0..*ExtensionGenomic Study Analysis Input
... extension:file 0..1ExtensionGenomicStudy.analysis.input.file
.... extension 0..0
.... url 1..1uri"file"
.... value[x] 0..1Reference(Genomic Data File)Value of extension
... extension:type 0..1ExtensionGenomicStudy.analysis.input.type
.... extension 0..0
.... url 1..1uri"type"
.... value[x] 0..1CodeableConceptValue of extension
Binding: Genomic Study Data Format ValueSet (example)
... extension:generatedBy 0..1ExtensionGenomicStudy.analysis.input.generatedBy
.... extension 0..0
.... url 1..1uri"generatedBy"
.... value[x] 0..1Value of extension
..... valueIdentifierIdentifier
..... valueReferenceReference(Genomic Study)
... value[x] 0..0

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraintsdoco
.. Extension 0..*ExtensionGenomic Study Analysis Input
... id 0..1stringUnique id for inter-element referencing
... Slices for extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
... extension:file 0..1ExtensionGenomicStudy.analysis.input.file
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..0
.... url 1..1uri"file"
.... value[x] 0..1Reference(Genomic Data File)Value of extension
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..0
.... url 1..1uri"type"
.... value[x] 0..1CodeableConceptValue of extension
Binding: Genomic Study Data Format ValueSet (example)
... extension:generatedBy 0..1ExtensionGenomicStudy.analysis.input.generatedBy
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..0
.... url 1..1uri"generatedBy"
.... value[x] 0..1Value of extension
..... valueIdentifierIdentifier
..... valueReferenceReference(Genomic Study)
... url 1..1uri"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input"

doco Documentation for this format

This structure is derived from Extension

Summary

Complex Extension: Genomic Study Analysis Input

  • file: Reference: An Extension
  • type: CodeableConcept: An Extension
  • generatedBy: Identifier, Reference: An Extension

Differential View

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraintsdoco
.. Extension 0..*ExtensionGenomic Study Analysis Input
... extension:file 0..1ExtensionGenomicStudy.analysis.input.file
.... extension 0..0
.... url 1..1uri"file"
.... value[x] 0..1Reference(Genomic Data File)Value of extension
... extension:type 0..1ExtensionGenomicStudy.analysis.input.type
.... extension 0..0
.... url 1..1uri"type"
.... value[x] 0..1CodeableConceptValue of extension
Binding: Genomic Study Data Format ValueSet (example)
... extension:generatedBy 0..1ExtensionGenomicStudy.analysis.input.generatedBy
.... extension 0..0
.... url 1..1uri"generatedBy"
.... value[x] 0..1Value of extension
..... valueIdentifierIdentifier
..... valueReferenceReference(Genomic Study)
... value[x] 0..0

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraintsdoco
.. Extension 0..*ExtensionGenomic Study Analysis Input
... id 0..1stringUnique id for inter-element referencing
... Slices for extension 0..*ExtensionAdditional content defined by implementations
Slice: Unordered, Open by value:url
... extension:file 0..1ExtensionGenomicStudy.analysis.input.file
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..0
.... url 1..1uri"file"
.... value[x] 0..1Reference(Genomic Data File)Value of extension
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..0
.... url 1..1uri"type"
.... value[x] 0..1CodeableConceptValue of extension
Binding: Genomic Study Data Format ValueSet (example)
... extension:generatedBy 0..1ExtensionGenomicStudy.analysis.input.generatedBy
.... id 0..1stringUnique id for inter-element referencing
.... extension 0..0
.... url 1..1uri"generatedBy"
.... value[x] 0..1Value of extension
..... valueIdentifierIdentifier
..... valueReferenceReference(Genomic Study)
... url 1..1uri"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-input"

doco Documentation for this format

 

Other representations of profile: CSV, Excel, Schematron

Terminology Bindings

PathConformanceValueSet
Extension.extension:type.value[x]exampleGenomicStudyDataFormatVS (a valid code from Genomic Study Data Format CodeSystem)

Constraints

IdGradePath(s)DetailsRequirements
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()