This page is part of the Genetic Reporting Implementation Guide (v3.0.0-ballot: STU 3 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. The current version which supersedes this version is 3.0.0. For a full list of available versions, see the Directory of published versions
| Official URL: http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genomic-study-data-format-vs | Version: 3.0.0-ballot | |||
| Active as of 2023-12-18 | Computable Name: GenomicStudyDataFormatVS | |||
Backport of http://hl7.org/fhir/ValueSet/genomicstudy-dataformat
References
http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs
Expansion based on codesystem Genomic Study Data Format CodeSystem v3.0.0-ballot (CodeSystem)
This value set contains 40 concepts
| Code | System | Display |
| bam | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BAM |
| bed | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BED |
| bedpe | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BEDPE |
| bedgraph | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | BedGraph |
| bigbed | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | bigBed |
| bigWig | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | bigWig |
| birdsuite-files | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Birdsuite-Files |
| broadpeak | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | broadPeak |
| cbs | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | CBS |
| chemical-reactivity-probing-profiles | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Chemical-Reactivity-Probing-Profiles |
| chrom-sizes | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | chrom-sizes |
| cn | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | CN |
| custom-file-formats | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Custom-File-Formats |
| cytoband | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Cytoband |
| fasta | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | FASTA |
| gct | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GCT |
| cram | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | CRAM |
| genepred | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | genePred |
| gff-gtf | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GFF/GTF |
| gistic | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GISTIC |
| goby | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Goby |
| gwas | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | GWAS |
| igv | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | IGV |
| loh | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | LOH |
| maf-multiple-alignment-format | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | MAF-Multiple Alignment Format |
| maf-mutation-annotation-format | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | MAF-Mutation-Annotation-Format |
| merged-bam-file | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Merged BAM File |
| mut | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | MUT |
| narrowpeak | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | narrowPeak |
| psl | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | PSL |
| res | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | RES |
| rna-secondary-structure-formats | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | RNA-Secondary-Structure-Formats |
| sam | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | SAM |
| sample-info-attributes-file | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Sample-Info-Attributes-file |
| seg | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | SEG |
| tdf | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | TDF |
| track-line | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Track Line |
| type-line | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | Type Line |
| vcf | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | VCF |
| wig | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs | WIG |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |