Genomics Reporting Implementation Guide
1.1.0 - Ballot

This page is part of the Genetic Reporting Implementation Guide (v1.1.0: STU 2 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

: Example - Buccal swab for HLA typing - JSON Representation

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{
  "resourceType" : "Specimen",
  "id" : "specimen-hla-r4",
  "meta" : {
    "profile" : [
      "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/specimen"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n            <pre>buccal swab: 001-123456789 </pre>\n        </div>"
  },
  "identifier" : [
    {
      "system" : "http://specimensrus.com",
      "value" : "001^123456789"
    }
  ],
  "type" : {
    "coding" : [
      {
        "system" : "http://snomed.info/sct",
        "code" : "258564008",
        "display" : "Buccal smear sample"
      }
    ]
  },
  "subject" : {
    "display" : "de-identified patient"
  },
  "receivedTime" : "2018-05-01",
  "collection" : {
    "method" : {
      "coding" : [
        {
          "system" : "http://snomed.info/sct",
          "code" : "418622002",
          "display" : "Taking oral swab (procedure)"
        }
      ]
    },
    "bodySite" : {
      "coding" : [
        {
          "system" : "http://snomed.info/sct",
          "code" : "261063000",
          "display" : "Buccal space"
        }
      ]
    }
  }
}