Genomics Reporting Implementation Guide
1.1.0 - Ballot

This page is part of the Genetic Reporting Implementation Guide (v1.1.0: STU 2 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

: Example - Sequence Phase Relation - XML Representation

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<Observation xmlns="http://hl7.org/fhir">
  <id value="SequencePhaseRelationExample1"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/sequence-phase-relationship"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative</b></p><p></p><p><b>category</b>: <span title="Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span></p><p><b>code</b>: <span title="Codes: {http://loinc.org 82120-7}">Allelic phase</span></p><p><b>issued</b>: Mar 5, 2019 4:04:44 PM</p><p><b>value</b>: <span title="Codes: {http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/SequencePhaseRelationshipCS Cis}">Cis</span></p><p><b>derivedFrom</b>: </p><ul><li><a href="Observation-VariantExample1.html">Generated Summary: <span title="Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>; <span title="Codes: {http://loinc.org 69548-6}">Genetic variant assessment</span>; effective: 2019-04-01; <span title="Codes: {http://loinc.org LA9633-4}">Present</span>; <span title="Codes: {http://snomed.info/sct 10828004}">Positive (qualifier value)</span>; <span title="Codes: {http://loinc.org LA26398-0}">Sequencing</span></a></li><li><a href="Observation-VariantExample2.html">Generated Summary: <span title="Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>; <span title="Codes: {http://loinc.org 69548-6}">Genetic variant assessment</span>; effective: 2019-04-01; <span title="Codes: {http://loinc.org LA9633-4}">Present</span>; <span title="Codes: {http://loinc.org LA26398-0}">Sequencing</span></a></li></ul></div>
  </text>
  <status value="final"/>
  <category>
    <coding>
      <system value="http://terminology.hl7.org/CodeSystem/observation-category"/>
      <code value="laboratory"/>
    </coding>
  </category>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="82120-7"/>
    </coding>
  </code>
  <issued value="2019-03-05T16:04:44+00:00"/>
  <valueCodeableConcept>
    <coding>
      <system
              value="http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/SequencePhaseRelationshipCS"/>
      <code value="Cis"/>
      <display value="Cis"/>
    </coding>
  </valueCodeableConcept>
  <derivedFrom>
    <reference value="Observation/VariantExample1"/>
  </derivedFrom>
  <derivedFrom>
    <reference value="Observation/VariantExample2"/>
  </derivedFrom>
</Observation>