Genomics Reporting Implementation Guide
1.1.0 - Ballot

This page is part of the Genetic Reporting Implementation Guide (v1.1.0: STU 2 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Example Observation: Example - Observation-Pgx-var-1021

Generated Narrative

category: Laboratory

code: Genetic variant assessment

subject: Generated Summary: Medical Record Number: m123 (USUAL); Adam B. Everyman ; gender: male; birthDate: 1951-01-20

effective: 2020-01-01

value: Present

method: Sequencing

component

code: Genomic reference sequence [ID]

value: b37 Chr10

component

code: Genomic coordinate system [Type]

value: 1-based character counting

component

code: Variant exact start and end

value: 96741053-96741053

component

code: Genomic ref allele [ID]

value: A

component

code: Genomic alt allele [ID]

value: A

component

code: Genomic source class [Type]

value: Germline

component

code: Allelic state

value: homozygous

component

code: Gene studied [ID]

value: CYP2C9

component

code: DNA Change Type

value: wild type

component

code: Allelic read depth

value: >20