Genomics Reporting Implementation Guide
1.1.0 - Ballot

This page is part of the Genetic Reporting Implementation Guide (v1.1.0: STU 2 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

: Example - Observation-GrouperEx03 - JSON Representation

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{
  "resourceType" : "Observation",
  "id" : "GrouperEx03",
  "meta" : {
    "profile" : [
      "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/grouper"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative</b></p><p></p><p><b>category</b>: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span></p><p><b>code</b>: <span title=\"Codes: {http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/TbdCodes grouper}\">grouper</span></p><p><b>hasMember</b>: </p><ul><li><a href=\"Observation-Pgx-var-1011.html\">NC_000010.10(CYP2C19):g.96521657C=. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-Pgx-var-1012.html\">NC_000010.10(CYP2C19):g.96522463A=. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-Pgx-var-1013.html\">NC_000010.10(CYP2C19):g.96535173T=. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-Pgx-var-1014.html\">NC_000010.10(CYP2C19):g.96535210G=. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-Pgx-var-1015.html\">NC_000010.10(CYP2C19):g.96540410G&gt;A. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-Pgx-var-1016.html\">NC_000010.10(CYP2C19):g.96541616G=. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-Pgx-var-1017.html\">NC_000010.10(CYP2C19):g.96541756T=. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-Pgx-var-1018.html\">NC_000010.10(CYP2C19):g.96612495C=. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-Pgx-var-1019.html\">NC_000016.9(VKORC1):g.31096368C&gt;T. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-Pgx-var-1020.html\">NC_000010.10(CYP2C9):g.96702047C=. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-Pgx-var-1021.html\">NC_000010.10(CYP2C9):g.96741053A=. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 69548-6}\">Genetic variant assessment</span>; effective: 2020-01-01; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span>; <span title=\"Codes: {http://loinc.org LA26398-0}\">Sequencing</span></a></li><li><a href=\"Observation-RegionStudiedPGx1.html\">CYP2C19. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 53041-0}\">DNA region of interest panel</span></a></li><li><a href=\"Observation-RegionStudiedPGx2.html\">CYP2C9. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 53041-0}\">DNA region of interest panel</span></a></li><li><a href=\"Observation-RegionStudiedPGx3.html\">VKORC1. Generated Summary: <span title=\"Codes: {http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 53041-0}\">DNA region of interest panel</span></a></li></ul></div>"
  },
  "status" : "final",
  "category" : [
    {
      "coding" : [
        {
          "system" : "http://terminology.hl7.org/CodeSystem/observation-category",
          "code" : "laboratory"
        }
      ]
    }
  ],
  "code" : {
    "coding" : [
      {
        "system" : "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/TbdCodes",
        "code" : "grouper"
      }
    ]
  },
  "hasMember" : [
    {
      "reference" : "Observation/Pgx-var-1011",
      "display" : "NC_000010.10(CYP2C19):g.96521657C="
    },
    {
      "reference" : "Observation/Pgx-var-1012",
      "display" : "NC_000010.10(CYP2C19):g.96522463A="
    },
    {
      "reference" : "Observation/Pgx-var-1013",
      "display" : "NC_000010.10(CYP2C19):g.96535173T="
    },
    {
      "reference" : "Observation/Pgx-var-1014",
      "display" : "NC_000010.10(CYP2C19):g.96535210G="
    },
    {
      "reference" : "Observation/Pgx-var-1015",
      "display" : "NC_000010.10(CYP2C19):g.96540410G>A"
    },
    {
      "reference" : "Observation/Pgx-var-1016",
      "display" : "NC_000010.10(CYP2C19):g.96541616G="
    },
    {
      "reference" : "Observation/Pgx-var-1017",
      "display" : "NC_000010.10(CYP2C19):g.96541756T="
    },
    {
      "reference" : "Observation/Pgx-var-1018",
      "display" : "NC_000010.10(CYP2C19):g.96612495C="
    },
    {
      "reference" : "Observation/Pgx-var-1019",
      "display" : "NC_000016.9(VKORC1):g.31096368C>T"
    },
    {
      "reference" : "Observation/Pgx-var-1020",
      "display" : "NC_000010.10(CYP2C9):g.96702047C="
    },
    {
      "reference" : "Observation/Pgx-var-1021",
      "display" : "NC_000010.10(CYP2C9):g.96741053A="
    },
    {
      "reference" : "Observation/RegionStudiedPGx1",
      "display" : "CYP2C19"
    },
    {
      "reference" : "Observation/RegionStudiedPGx2",
      "display" : "CYP2C9"
    },
    {
      "reference" : "Observation/RegionStudiedPGx3",
      "display" : "VKORC1"
    }
  ]
}