HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU Ballot 1

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v0.9.1: STU 1 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Example: mCODEGenomicsReportExample01


<DiagnosticReport xmlns="http://hl7.org/fhir">
  <id value="mCODEGenomicsReportExample01"/>
  <meta>
    <versionId value="0.1"/>
    <lastUpdated value="2019-04-01T15:35:58.045+00:00"/>
    <profile
             value="http://hl7.org/fhir/us/mcode/StructureDefinition/onco-core-GenomicsReport"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p><b>*** mCODE Example: Genomics Report ***</b></p><p><b>Test id</b>: mCODEGenomicsReportExample01</p><p><b>Performer</b>: Foundation Medicine</p><p><b>Test Name</b>: FoundationOne</p><p><b>Status</b>: final</p><p><b>Subject</b>: John B. Anyperson</p><p></p><p><b>Generated Summary:</b></p><p><b>id:</b> Medical Record Number = m123 (USUAL)</p><p><b>Effective</b>: 04/01/2019</p><p><b>Genetic Mutation Tested</b>: STK11</p><p><b>Gene variant presence</b>: DETECTED</p><p><b>Genomic source class</b>: Somatic</p><p><b>Variant HGVS name</b>: NM_000455.4:c.921-1G>C</p><p><b>Variant common name</b>: G242E</p></div>
  </text>
  <status value="final"/>
  <category>
    <coding>
      <system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
      <code value="GE"/>
      <display value="Genetics"/>
    </coding>
  </category>
  <code>
    <coding>
      <system value="http://www.ncbi.nlm.nih.gov/gtr"/>
      <code value="GTR000527976.2"/>
      <display value="FoundationOne"/>
    </coding>
  </code>
  <subject>
    <reference value="Patient/mCODEPatientExample01"/>
    <display value="John B. Anyperson"/>
  </subject>
  <effectiveDateTime value="2019-04-01"/>
  <issued value="2019-04-01T11:45:33+11:00"/>
  <performer>
    <reference value="Organization/mCODEOrganizationExampleFM1"/>
  </performer>
  <result>
    <reference value="Observation/mCODEGeneticVariantTestedExample01"/>
  </result>
  <result>
    <reference value="Observation/mCODEGeneticVariantFoundExample01"/>
  </result>
</DiagnosticReport>