HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU Ballot 1

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v0.9.1: STU 1 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Example: mCODEGenomicsReportExample01

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:DiagnosticReport;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "mCODEGenomicsReportExample01"];
  fhir:Resource.meta [
     fhir:Meta.versionId [ fhir:value "0.1" ];
     fhir:Meta.lastUpdated [ fhir:value "2019-04-01T15:35:58.045+00:00"^^xsd:dateTime ];
     fhir:Meta.profile [
       fhir:value "http://hl7.org/fhir/us/mcode/StructureDefinition/onco-core-GenomicsReport";
       fhir:index 0;
       fhir:link <http://hl7.org/fhir/us/mcode/StructureDefinition/onco-core-GenomicsReport>     ]
  ];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>*** mCODE Example: Genomics Report ***</b></p><p><b>Test id</b>: mCODEGenomicsReportExample01</p><p><b>Performer</b>: Foundation Medicine</p><p><b>Test Name</b>: FoundationOne</p><p><b>Status</b>: final</p><p><b>Subject</b>: John B. Anyperson</p><p></p><p><b>Generated Summary:</b></p><p><b>id:</b> Medical Record Number = m123 (USUAL)</p><p><b>Effective</b>: 04/01/2019</p><p><b>Genetic Mutation Tested</b>: STK11</p><p><b>Gene variant presence</b>: DETECTED</p><p><b>Genomic source class</b>: Somatic</p><p><b>Variant HGVS name</b>: NM_000455.4:c.921-1G>C</p><p><b>Variant common name</b>: G242E</p></div>"
  ];
  fhir:DiagnosticReport.status [ fhir:value "final"];
  fhir:DiagnosticReport.category [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0074" ];
       fhir:Coding.code [ fhir:value "GE" ];
       fhir:Coding.display [ fhir:value "Genetics" ]     ]
  ];
  fhir:DiagnosticReport.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://www.ncbi.nlm.nih.gov/gtr" ];
       fhir:Coding.code [ fhir:value "GTR000527976.2" ];
       fhir:Coding.display [ fhir:value "FoundationOne" ]     ]
  ];
  fhir:DiagnosticReport.subject [
     fhir:Reference.reference [ fhir:value "Patient/mCODEPatientExample01" ];
     fhir:Reference.display [ fhir:value "John B. Anyperson" ]
  ];
  fhir:DiagnosticReport.effectiveDateTime [ fhir:value "2019-04-01"^^xsd:date];
  fhir:DiagnosticReport.issued [ fhir:value "2019-04-01T11:45:33+11:00"^^xsd:dateTime];
  fhir:DiagnosticReport.performer [
     fhir:index 0;
     fhir:Reference.reference [ fhir:value "Organization/mCODEOrganizationExampleFM1" ]
  ];
  fhir:DiagnosticReport.result [
     fhir:index 0;
     fhir:Reference.reference [ fhir:value "Observation/mCODEGeneticVariantTestedExample01" ]
  ], [
     fhir:index 1;
     fhir:Reference.reference [ fhir:value "Observation/mCODEGeneticVariantFoundExample01" ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.