FHIR to OMOP FHIR IG
1.0.0-ballot - INFORMATIVE 1 - Ballot International flag

This page is part of the Vulcan FHIR to OMOP FHIR Implementation Guide (v1.0.0-ballot: INFORMATIVE 1 Ballot 1) based on FHIR (HL7® FHIR® Standard) v5.0.0. No current official version has been published yet. For a full list of available versions, see the Directory of published versions

Logical Model: Specimen OMOP Table

Official URL: http://hl7.org/fhir/uv/omop/StructureDefinition/Specimen Version: 1.0.0-ballot
Standards status: Informative Maturity Level: 1 Computable Name: Specimen

The specimen domain contains the records identifying biological samples from a person.

Usages:

  • This Logical Model is not used by any profiles in this Implementation Guide

You can also check for usages in the FHIR IG Statistics

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 code Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 code Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 code Unit
... anatomic_site_concept_id 0..1 code Anatomic Site
... disease_status_concept_id 0..1 code Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format

This structure is derived from Base

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 code Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 code Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 code Unit
... anatomic_site_concept_id 0..1 code Anatomic Site
... disease_status_concept_id 0..1 code Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 code Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 code Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 code Unit
... anatomic_site_concept_id 0..1 code Anatomic Site
... disease_status_concept_id 0..1 code Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format

This structure is derived from Base

Summary

Mandatory: 0 element(5 nested mandatory elements)

Structures

This structure refers to these other structures:

Maturity: 1

Key Elements View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 code Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 code Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 code Unit
... anatomic_site_concept_id 0..1 code Anatomic Site
... disease_status_concept_id 0..1 code Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format

Differential View

This structure is derived from Base

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 code Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 code Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 code Unit
... anatomic_site_concept_id 0..1 code Anatomic Site
... disease_status_concept_id 0..1 code Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Base Specimen OMOP Table
Instances of this logical model can be the target of a Reference
... specimen_id 1..1 code Specimen Identifier
... person_id 1..1 Reference(Person OMOP Table) Person
... specimen_concept_id 1..1 code Specimen
... specimen_date 1..1 date Specimen Date
... specimen_datetime 0..1 dateTime Specimen Datetime
... quantity 0..1 integer Quantity
... unit_concept_id 0..1 code Unit
... anatomic_site_concept_id 0..1 code Anatomic Site
... disease_status_concept_id 0..1 code Disease Status
... specimen_source_id 0..1 string Specimen Source
... specimen_source_value 0..1 string Specimen Source Value
... unit_source_value 0..1 string Unit Source Value
... anatomic_site_source_value 0..1 string Anatomic Site Source Value
... disease_status_source_value 0..1 string Disease Site Source Value

doco Documentation for this format

This structure is derived from Base

Summary

Mandatory: 0 element(5 nested mandatory elements)

Structures

This structure refers to these other structures:

Maturity: 1

 

Other representations of profile: CSV, Excel