This page is part of the Genetic Reporting Implementation Guide (v1.0.0: STU 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Sequence Phase Relationship - XML Representation

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Raw xml

<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="seq-phase-relationship"/>
  <meta>
    <profile value="http://hl7.org/fhir/StructureDefinition/shareablecodesystem"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><h2>seq-phase-relationship</h2><div><p>Sequence Phase Relationship Types</p>
</div><p>This code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/seq-phase-relationship defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style="white-space:nowrap">Cis<a name="seq-phase-relationship-Cis"> </a></td><td>Cis</td><td>Phase is in cis (same chromosome)</td></tr><tr><td style="white-space:nowrap">Trans<a name="seq-phase-relationship-Trans"> </a></td><td>Trans</td><td>Phase is in trans (different chromosomes)</td></tr><tr><td style="white-space:nowrap">Indeterminate<a name="seq-phase-relationship-Indeterminate"> </a></td><td>Indeterminate</td><td>Phase is unable to be determined</td></tr><tr><td style="white-space:nowrap">Unknown<a name="seq-phase-relationship-Unknown"> </a></td><td>Unknown</td><td>Phase is unknown</td></tr></table></div>
  </text>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
    <valueCode value="cg"/>
  </extension>
  <url
       value="http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/seq-phase-relationship"/>
  <version value="1.0.0"/>
  <name value="SequencePhaseRelationship"/>
  <title value="seq-phase-relationship"/>
  <status value="draft"/>
  <experimental value="false"/>
  <date value="2019-08-21T00:00:00-04:00"/>
  <publisher value="HL7 (Clinical Genomics)"/>
  <contact>
    <telecom>
      <system value="url"/>
      <value value="http://hl7.org/fhir"/>
    </telecom>
    <telecom>
      <system value="email"/>
      <value value="fhir@lists.hl7.org"/>
    </telecom>
  </contact>
  <contact>
    <telecom>
      <system value="url"/>
    </telecom>
    <telecom>
      <system value="email"/>
    </telecom>
  </contact>
  <description value="Sequence Phase Relationship Types"/>
  <caseSensitive value="true"/>
  <valueSet
            value="http://hl7.org/fhir/uv/genomics-reporting/ValueSet/seq-phase-relationship"/>
  <content value="complete"/>
  <concept>
    <code value="Cis"/>
    <display value="Cis"/>
    <definition value="Phase is in cis (same chromosome)"/>
  </concept>
  <concept>
    <code value="Trans"/>
    <display value="Trans"/>
    <definition value="Phase is in trans (different chromosomes)"/>
  </concept>
  <concept>
    <code value="Indeterminate"/>
    <display value="Indeterminate"/>
    <definition value="Phase is unable to be determined"/>
  </concept>
  <concept>
    <code value="Unknown"/>
    <display value="Unknown"/>
    <definition value="Phase is unknown"/>
  </concept>
</CodeSystem>