Genomics Reporting Implementation Guide (STU1)

This page is part of the Genetic Reporting Implementation Guide (v1.0.0: STU 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Sequence Phase Relationship - TTL Representation

(back to narrative)

Raw ttl 

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:CodeSystem;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "seq-phase-relationship"];
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "http://hl7.org/fhir/StructureDefinition/shareablecodesystem";
       fhir:index 0;
       fhir:link <http://hl7.org/fhir/StructureDefinition/shareablecodesystem>     ]
  ];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>seq-phase-relationship</h2><div><p>Sequence Phase Relationship Types</p>\n</div><p>This code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/seq-phase-relationship defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">Cis<a name=\"seq-phase-relationship-Cis\"> </a></td><td>Cis</td><td>Phase is in cis (same chromosome)</td></tr><tr><td style=\"white-space:nowrap\">Trans<a name=\"seq-phase-relationship-Trans\"> </a></td><td>Trans</td><td>Phase is in trans (different chromosomes)</td></tr><tr><td style=\"white-space:nowrap\">Indeterminate<a name=\"seq-phase-relationship-Indeterminate\"> </a></td><td>Indeterminate</td><td>Phase is unable to be determined</td></tr><tr><td style=\"white-space:nowrap\">Unknown<a name=\"seq-phase-relationship-Unknown\"> </a></td><td>Unknown</td><td>Phase is unknown</td></tr></table></div>"
  ];
  fhir:DomainResource.extension [
     fhir:index 0;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg" ];
     fhir:Extension.valueCode [ fhir:value "cg" ]
  ];
  fhir:CodeSystem.url [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/seq-phase-relationship"];
  fhir:CodeSystem.version [ fhir:value "1.0.0"];
  fhir:CodeSystem.name [ fhir:value "SequencePhaseRelationship"];
  fhir:CodeSystem.title [ fhir:value "seq-phase-relationship"];
  fhir:CodeSystem.status [ fhir:value "draft"];
  fhir:CodeSystem.experimental [ fhir:value "false"^^xsd:boolean];
  fhir:CodeSystem.date [ fhir:value "2019-08-21T00:00:00-04:00"^^xsd:dateTime];
  fhir:CodeSystem.publisher [ fhir:value "HL7 (Clinical Genomics)"];
  fhir:CodeSystem.contact [
     fhir:index 0;
     fhir:ContactDetail.telecom [
       fhir:index 0;
       fhir:ContactPoint.system [ fhir:value "url" ];
       fhir:ContactPoint.value [ fhir:value "http://hl7.org/fhir" ]     ], [
       fhir:index 1;
       fhir:ContactPoint.system [ fhir:value "email" ];
       fhir:ContactPoint.value [ fhir:value "fhir@lists.hl7.org" ]     ]
  ], [
     fhir:index 1;
     fhir:ContactDetail.telecom [
       fhir:index 0;
       fhir:ContactPoint.system [ fhir:value "url" ]     ], [
       fhir:index 1;
       fhir:ContactPoint.system [ fhir:value "email" ]     ]
  ];
  fhir:CodeSystem.description [ fhir:value "Sequence Phase Relationship Types"];
  fhir:CodeSystem.caseSensitive [ fhir:value "true"^^xsd:boolean];
  fhir:CodeSystem.valueSet [
     fhir:value "http://hl7.org/fhir/uv/genomics-reporting/ValueSet/seq-phase-relationship";
     fhir:link <http://hl7.org/fhir/uv/genomics-reporting/ValueSet/seq-phase-relationship>
  ];
  fhir:CodeSystem.content [ fhir:value "complete"];
  fhir:CodeSystem.concept [
     fhir:index 0;
     fhir:CodeSystem.concept.code [ fhir:value "Cis" ];
     fhir:CodeSystem.concept.display [ fhir:value "Cis" ];
     fhir:CodeSystem.concept.definition [ fhir:value "Phase is in cis (same chromosome)" ]
  ], [
     fhir:index 1;
     fhir:CodeSystem.concept.code [ fhir:value "Trans" ];
     fhir:CodeSystem.concept.display [ fhir:value "Trans" ];
     fhir:CodeSystem.concept.definition [ fhir:value "Phase is in trans (different chromosomes)" ]
  ], [
     fhir:index 2;
     fhir:CodeSystem.concept.code [ fhir:value "Indeterminate" ];
     fhir:CodeSystem.concept.display [ fhir:value "Indeterminate" ];
     fhir:CodeSystem.concept.definition [ fhir:value "Phase is unable to be determined" ]
  ], [
     fhir:index 3;
     fhir:CodeSystem.concept.code [ fhir:value "Unknown" ];
     fhir:CodeSystem.concept.display [ fhir:value "Unknown" ];
     fhir:CodeSystem.concept.definition [ fhir:value "Phase is unknown" ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.