This page is part of the Genetic Reporting Implementation Guide (v1.0.0: STU 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Sequence Phase Relationship - JSON Representation

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Raw json

{
  "resourceType" : "CodeSystem",
  "id" : "seq-phase-relationship",
  "meta" : {
    "profile" : [
      "http://hl7.org/fhir/StructureDefinition/shareablecodesystem"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>seq-phase-relationship</h2><div><p>Sequence Phase Relationship Types</p>\n</div><p>This code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/seq-phase-relationship defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">Cis<a name=\"seq-phase-relationship-Cis\"> </a></td><td>Cis</td><td>Phase is in cis (same chromosome)</td></tr><tr><td style=\"white-space:nowrap\">Trans<a name=\"seq-phase-relationship-Trans\"> </a></td><td>Trans</td><td>Phase is in trans (different chromosomes)</td></tr><tr><td style=\"white-space:nowrap\">Indeterminate<a name=\"seq-phase-relationship-Indeterminate\"> </a></td><td>Indeterminate</td><td>Phase is unable to be determined</td></tr><tr><td style=\"white-space:nowrap\">Unknown<a name=\"seq-phase-relationship-Unknown\"> </a></td><td>Unknown</td><td>Phase is unknown</td></tr></table></div>"
  },
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode" : "cg"
    }
  ],
  "url" : "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/seq-phase-relationship",
  "version" : "1.0.0",
  "name" : "SequencePhaseRelationship",
  "title" : "seq-phase-relationship",
  "status" : "draft",
  "experimental" : false,
  "date" : "2019-08-21T00:00:00-04:00",
  "publisher" : "HL7 (Clinical Genomics)",
  "contact" : [
    {
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://hl7.org/fhir"
        },
        {
          "system" : "email",
          "value" : "fhir@lists.hl7.org"
        }
      ]
    },
    {
      "telecom" : [
        {
          "system" : "url"
        },
        {
          "system" : "email"
        }
      ]
    }
  ],
  "description" : "Sequence Phase Relationship Types",
  "caseSensitive" : true,
  "valueSet" : "http://hl7.org/fhir/uv/genomics-reporting/ValueSet/seq-phase-relationship",
  "content" : "complete",
  "concept" : [
    {
      "code" : "Cis",
      "display" : "Cis",
      "definition" : "Phase is in cis (same chromosome)"
    },
    {
      "code" : "Trans",
      "display" : "Trans",
      "definition" : "Phase is in trans (different chromosomes)"
    },
    {
      "code" : "Indeterminate",
      "display" : "Indeterminate",
      "definition" : "Phase is unable to be determined"
    },
    {
      "code" : "Unknown",
      "display" : "Unknown",
      "definition" : "Phase is unknown"
    }
  ]
}