minimal Common Oncology Data Elements (mCODE) Implementation Guide
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This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v3.0.0: STU 3) based on FHIR R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: Human Specimen Type Value Set - XML Representation

Draft as of 2023-10-26 Maturity Level: 1

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<ValueSet xmlns="http://hl7.org/fhir">
  <id value="mcode-human-specimen-type-vs"/>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><ul><li>Include these codes as defined in <a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html"><code>http://terminology.hl7.org/CodeSystem/v2-0487</code></a><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-AMN">AMN</a></td><td>Amniotic fluid</td><td>Amniotic fluid</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BIFL">BIFL</a></td><td>Bile Fluid</td><td>Bile Fluid</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BLD">BLD</a></td><td>Whole blood</td><td>Whole blood</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BLDA">BLDA</a></td><td>Blood arterial</td><td>Blood arterial</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BLDCO">BLDCO</a></td><td>Cord blood</td><td>Cord blood</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BLDV">BLDV</a></td><td>Blood venous</td><td>Blood venous</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BON">BON</a></td><td>Bone</td><td>Bone</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-CSERU">CSERU</a></td><td>Serum, Convalescent</td><td>Serum, Convalescent</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-CSF">CSF</a></td><td>Cerebral spinal fluid</td><td>Cerebral spinal fluid</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-CVM">CVM</a></td><td>Cervical Mucus</td><td>Cervical Mucus</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-DUFL">DUFL</a></td><td>Duodenal fluid</td><td>Duodenal fluid</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-FBLOOD">FBLOOD</a></td><td>Blood, Fetal</td><td>Blood, Fetal</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-FGA">FGA</a></td><td>Fluid, Abdomen</td><td>Fluid,  Abdomen</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-GENV">GENV</a></td><td>Genital vaginal</td><td>Genital vaginal</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-HYDC">HYDC</a></td><td>Fluid, Hydrocele</td><td>Fluid, Hydrocele</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-KIDFLD">KIDFLD</a></td><td>Fluid, Kidney</td><td>Fluid, Kidney</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-LSAC">LSAC</a></td><td>Fluid, Lumbar Sac</td><td>Fluid, Lumbar Sac</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-MAR">MAR</a></td><td>Marrow</td><td>Marrow</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-PAFL">PAFL</a></td><td>Pancreatic fluid</td><td>Pancreatic fluid</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-PCFL">PCFL</a></td><td>Fluid, Pericardial</td><td>Fluid, Pericardial</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-PLC">PLC</a></td><td>Placenta</td><td>Placenta</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-PLR">PLR</a></td><td>Pleural fluid (thoracentesis fluid)</td><td>Pleural fluid (thoracentesis fluid)</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-SAL">SAL</a></td><td>Saliva</td><td>Saliva</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-SKN">SKN</a></td><td>Skin</td><td>Skin</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-SMN">SMN</a></td><td>Seminal fluid</td><td>Seminal fluid</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-SNV">SNV</a></td><td>Fluid, synovial (Joint fluid)</td><td>Fluid, synovial (Joint fluid)</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-SPT">SPT</a></td><td>Sputum</td><td>Sputum</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-TISS">TISS</a></td><td>Tissue</td><td>Tissue</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-TUMOR">TUMOR</a></td><td>Tumor</td><td>Tumor</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-VITF">VITF</a></td><td>Vitreous Fluid</td><td>Vitreous Fluid</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-WND">WND</a></td><td>Wound</td><td>Wound</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-UR">UR</a></td><td>Urine</td><td>Urine</td></tr><tr><td><a href="http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-STL">STL</a></td><td>Stool = Fecal</td><td>Stool = Fecal</td></tr></table></li></ul></div>
  </text>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
    <valueInteger value="1"/>
  </extension>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
    <valueCode value="cic"/>
  </extension>
  <url
       value="http://hl7.org/fhir/us/mcode/ValueSet/mcode-human-specimen-type-vs"/>
  <version value="3.0.0"/>
  <name value="HumanSpecimenTypeVS"/>
  <title value="Human Specimen Type Value Set"/>
  <status value="draft"/>
  <experimental value="false"/>
  <date value="2023-10-26T00:01:45+00:00"/>
  <publisher value="HL7 International / Clinical Interoperability Council"/>
  <contact>
    <name value="HL7 International / Clinical Interoperability Council"/>
    <telecom>
      <system value="url"/>
      <value value="http://www.hl7.org/Special/committees/cic"/>
    </telecom>
    <telecom>
      <system value="email"/>
      <value value="ciclist@lists.HL7.org"/>
    </telecom>
  </contact>
  <description
               value="Specimen taken from a human subject. The values include the subset of codes in the HL7 Specimen Type code system (https://terminology.hl7.org/CodeSystem-v2-0487.html) representing body sites and body fluids likely to be used in tumor marker or genomic testing. The most specific term available should be used, for example, for arterial blood, use #BLDA not #BLD."/>
  <jurisdiction>
    <coding>
      <system value="urn:iso:std:iso:3166"/>
      <code value="US"/>
      <display value="United States of America"/>
    </coding>
  </jurisdiction>
  <compose>
    <include>
      <system value="http://terminology.hl7.org/CodeSystem/v2-0487"/>
      <concept>
        <code value="AMN"/>
        <display value="Amniotic fluid"/>
      </concept>
      <concept>
        <code value="BIFL"/>
        <display value="Bile Fluid"/>
      </concept>
      <concept>
        <code value="BLD"/>
        <display value="Whole blood"/>
      </concept>
      <concept>
        <code value="BLDA"/>
        <display value="Blood arterial"/>
      </concept>
      <concept>
        <code value="BLDCO"/>
        <display value="Cord blood"/>
      </concept>
      <concept>
        <code value="BLDV"/>
        <display value="Blood venous"/>
      </concept>
      <concept>
        <code value="BON"/>
        <display value="Bone"/>
      </concept>
      <concept>
        <code value="CSERU"/>
        <display value="Serum, Convalescent"/>
      </concept>
      <concept>
        <code value="CSF"/>
        <display value="Cerebral spinal fluid"/>
      </concept>
      <concept>
        <code value="CVM"/>
        <display value="Cervical Mucus"/>
      </concept>
      <concept>
        <code value="DUFL"/>
        <display value="Duodenal fluid"/>
      </concept>
      <concept>
        <code value="FBLOOD"/>
        <display value="Blood, Fetal"/>
      </concept>
      <concept>
        <code value="FGA"/>
        <display value="Fluid, Abdomen"/>
      </concept>
      <concept>
        <code value="GENV"/>
        <display value="Genital vaginal"/>
      </concept>
      <concept>
        <code value="HYDC"/>
        <display value="Fluid, Hydrocele"/>
      </concept>
      <concept>
        <code value="KIDFLD"/>
        <display value="Fluid, Kidney"/>
      </concept>
      <concept>
        <code value="LSAC"/>
        <display value="Fluid, Lumbar Sac"/>
      </concept>
      <concept>
        <code value="MAR"/>
        <display value="Marrow"/>
      </concept>
      <concept>
        <code value="PAFL"/>
        <display value="Pancreatic fluid"/>
      </concept>
      <concept>
        <code value="PCFL"/>
        <display value="Fluid, Pericardial"/>
      </concept>
      <concept>
        <code value="PLC"/>
        <display value="Placenta"/>
      </concept>
      <concept>
        <code value="PLR"/>
        <display value="Pleural fluid (thoracentesis fluid)"/>
      </concept>
      <concept>
        <code value="SAL"/>
        <display value="Saliva"/>
      </concept>
      <concept>
        <code value="SKN"/>
        <display value="Skin"/>
      </concept>
      <concept>
        <code value="SMN"/>
        <display value="Seminal fluid"/>
      </concept>
      <concept>
        <code value="SNV"/>
        <display value="Fluid, synovial (Joint fluid)"/>
      </concept>
      <concept>
        <code value="SPT"/>
        <display value="Sputum"/>
      </concept>
      <concept>
        <code value="TISS"/>
        <display value="Tissue"/>
      </concept>
      <concept>
        <code value="TUMOR"/>
        <display value="Tumor"/>
      </concept>
      <concept>
        <code value="VITF"/>
        <display value="Vitreous Fluid"/>
      </concept>
      <concept>
        <code value="WND"/>
        <display value="Wound"/>
      </concept>
      <concept>
        <code value="UR"/>
        <display value="Urine"/>
      </concept>
      <concept>
        <code value="STL"/>
        <display value="Stool = Fecal"/>
      </concept>
    </include>
  </compose>
</ValueSet>