minimal Common Oncology Data Elements (mCODE) Implementation Guide
3.0.0 - STU3 Release United States of America flag

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v3.0.0: STU 3) based on FHIR R4. This is the current published version. For a full list of available versions, see the Directory of published versions

: Human Specimen Type Value Set - TTL Representation

Draft as of 2023-10-26 Maturity Level: 1

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ValueSet ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "mcode-human-specimen-type-vs"] ; # 
  fhir:text [
fhir:status [ fhir:v "extensions" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><ul><li>Include these codes as defined in <a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html\"><code>http://terminology.hl7.org/CodeSystem/v2-0487</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-AMN\">AMN</a></td><td>Amniotic fluid</td><td>Amniotic fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BIFL\">BIFL</a></td><td>Bile Fluid</td><td>Bile Fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BLD\">BLD</a></td><td>Whole blood</td><td>Whole blood</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BLDA\">BLDA</a></td><td>Blood arterial</td><td>Blood arterial</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BLDCO\">BLDCO</a></td><td>Cord blood</td><td>Cord blood</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BLDV\">BLDV</a></td><td>Blood venous</td><td>Blood venous</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-BON\">BON</a></td><td>Bone</td><td>Bone</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-CSERU\">CSERU</a></td><td>Serum, Convalescent</td><td>Serum, Convalescent</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-CSF\">CSF</a></td><td>Cerebral spinal fluid</td><td>Cerebral spinal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-CVM\">CVM</a></td><td>Cervical Mucus</td><td>Cervical Mucus</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-DUFL\">DUFL</a></td><td>Duodenal fluid</td><td>Duodenal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-FBLOOD\">FBLOOD</a></td><td>Blood, Fetal</td><td>Blood, Fetal</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-FGA\">FGA</a></td><td>Fluid, Abdomen</td><td>Fluid,  Abdomen</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-GENV\">GENV</a></td><td>Genital vaginal</td><td>Genital vaginal</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-HYDC\">HYDC</a></td><td>Fluid, Hydrocele</td><td>Fluid, Hydrocele</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-KIDFLD\">KIDFLD</a></td><td>Fluid, Kidney</td><td>Fluid, Kidney</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-LSAC\">LSAC</a></td><td>Fluid, Lumbar Sac</td><td>Fluid, Lumbar Sac</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-MAR\">MAR</a></td><td>Marrow</td><td>Marrow</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-PAFL\">PAFL</a></td><td>Pancreatic fluid</td><td>Pancreatic fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-PCFL\">PCFL</a></td><td>Fluid, Pericardial</td><td>Fluid, Pericardial</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-PLC\">PLC</a></td><td>Placenta</td><td>Placenta</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-PLR\">PLR</a></td><td>Pleural fluid (thoracentesis fluid)</td><td>Pleural fluid (thoracentesis fluid)</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-SAL\">SAL</a></td><td>Saliva</td><td>Saliva</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-SKN\">SKN</a></td><td>Skin</td><td>Skin</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-SMN\">SMN</a></td><td>Seminal fluid</td><td>Seminal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-SNV\">SNV</a></td><td>Fluid, synovial (Joint fluid)</td><td>Fluid, synovial (Joint fluid)</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-SPT\">SPT</a></td><td>Sputum</td><td>Sputum</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-TISS\">TISS</a></td><td>Tissue</td><td>Tissue</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-TUMOR\">TUMOR</a></td><td>Tumor</td><td>Tumor</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-VITF\">VITF</a></td><td>Vitreous Fluid</td><td>Vitreous Fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-WND\">WND</a></td><td>Wound</td><td>Wound</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-UR\">UR</a></td><td>Urine</td><td>Urine</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v2-0487.html#v2-0487-STL\">STL</a></td><td>Stool = Fecal</td><td>Stool = Fecal</td></tr></table></li></ul></div>"
  ] ; # 
  fhir:extension ( [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"^^xsd:anyURI ] ;
fhir:value [ fhir:v "1"^^xsd:integer ]
  ] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"^^xsd:anyURI ] ;
fhir:value [ fhir:v "cic" ]
  ] ) ; # 
  fhir:url [ fhir:v "http://hl7.org/fhir/us/mcode/ValueSet/mcode-human-specimen-type-vs"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "3.0.0"] ; # 
  fhir:name [ fhir:v "HumanSpecimenTypeVS"] ; # 
  fhir:title [ fhir:v "Human Specimen Type Value Set"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:experimental [ fhir:v "false"^^xsd:boolean] ; # 
  fhir:date [ fhir:v "2023-10-26T00:01:45+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "HL7 International / Clinical Interoperability Council"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "HL7 International / Clinical Interoperability Council" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://www.hl7.org/Special/committees/cic" ]     ] [
fhir:system [ fhir:v "email" ] ;
fhir:value [ fhir:v "ciclist@lists.HL7.org" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "Specimen taken from a human subject. The values include the subset of codes in the HL7 Specimen Type code system (https://terminology.hl7.org/CodeSystem-v2-0487.html) representing body sites and body fluids likely to be used in tumor marker or genomic testing. The most specific term available should be used, for example, for arterial blood, use #BLDA not #BLD."] ; # 
  fhir:jurisdiction ( [
    ( fhir:coding [
fhir:system [ fhir:v "urn:iso:std:iso:3166"^^xsd:anyURI ] ;
fhir:code [ fhir:v "US" ] ;
fhir:display [ fhir:v "United States of America" ]     ] )
  ] ) ; # 
  fhir:compose [
    ( fhir:include [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v2-0487"^^xsd:anyURI ] ;
      ( fhir:concept [
fhir:code [ fhir:v "AMN" ] ;
fhir:display [ fhir:v "Amniotic fluid" ]       ] [
fhir:code [ fhir:v "BIFL" ] ;
fhir:display [ fhir:v "Bile Fluid" ]       ] [
fhir:code [ fhir:v "BLD" ] ;
fhir:display [ fhir:v "Whole blood" ]       ] [
fhir:code [ fhir:v "BLDA" ] ;
fhir:display [ fhir:v "Blood arterial" ]       ] [
fhir:code [ fhir:v "BLDCO" ] ;
fhir:display [ fhir:v "Cord blood" ]       ] [
fhir:code [ fhir:v "BLDV" ] ;
fhir:display [ fhir:v "Blood venous" ]       ] [
fhir:code [ fhir:v "BON" ] ;
fhir:display [ fhir:v "Bone" ]       ] [
fhir:code [ fhir:v "CSERU" ] ;
fhir:display [ fhir:v "Serum, Convalescent" ]       ] [
fhir:code [ fhir:v "CSF" ] ;
fhir:display [ fhir:v "Cerebral spinal fluid" ]       ] [
fhir:code [ fhir:v "CVM" ] ;
fhir:display [ fhir:v "Cervical Mucus" ]       ] [
fhir:code [ fhir:v "DUFL" ] ;
fhir:display [ fhir:v "Duodenal fluid" ]       ] [
fhir:code [ fhir:v "FBLOOD" ] ;
fhir:display [ fhir:v "Blood, Fetal" ]       ] [
fhir:code [ fhir:v "FGA" ] ;
fhir:display [ fhir:v "Fluid, Abdomen" ]       ] [
fhir:code [ fhir:v "GENV" ] ;
fhir:display [ fhir:v "Genital vaginal" ]       ] [
fhir:code [ fhir:v "HYDC" ] ;
fhir:display [ fhir:v "Fluid, Hydrocele" ]       ] [
fhir:code [ fhir:v "KIDFLD" ] ;
fhir:display [ fhir:v "Fluid, Kidney" ]       ] [
fhir:code [ fhir:v "LSAC" ] ;
fhir:display [ fhir:v "Fluid, Lumbar Sac" ]       ] [
fhir:code [ fhir:v "MAR" ] ;
fhir:display [ fhir:v "Marrow" ]       ] [
fhir:code [ fhir:v "PAFL" ] ;
fhir:display [ fhir:v "Pancreatic fluid" ]       ] [
fhir:code [ fhir:v "PCFL" ] ;
fhir:display [ fhir:v "Fluid, Pericardial" ]       ] [
fhir:code [ fhir:v "PLC" ] ;
fhir:display [ fhir:v "Placenta" ]       ] [
fhir:code [ fhir:v "PLR" ] ;
fhir:display [ fhir:v "Pleural fluid (thoracentesis fluid)" ]       ] [
fhir:code [ fhir:v "SAL" ] ;
fhir:display [ fhir:v "Saliva" ]       ] [
fhir:code [ fhir:v "SKN" ] ;
fhir:display [ fhir:v "Skin" ]       ] [
fhir:code [ fhir:v "SMN" ] ;
fhir:display [ fhir:v "Seminal fluid" ]       ] [
fhir:code [ fhir:v "SNV" ] ;
fhir:display [ fhir:v "Fluid, synovial (Joint fluid)" ]       ] [
fhir:code [ fhir:v "SPT" ] ;
fhir:display [ fhir:v "Sputum" ]       ] [
fhir:code [ fhir:v "TISS" ] ;
fhir:display [ fhir:v "Tissue" ]       ] [
fhir:code [ fhir:v "TUMOR" ] ;
fhir:display [ fhir:v "Tumor" ]       ] [
fhir:code [ fhir:v "VITF" ] ;
fhir:display [ fhir:v "Vitreous Fluid" ]       ] [
fhir:code [ fhir:v "WND" ] ;
fhir:display [ fhir:v "Wound" ]       ] [
fhir:code [ fhir:v "UR" ] ;
fhir:display [ fhir:v "Urine" ]       ] [
fhir:code [ fhir:v "STL" ] ;
fhir:display [ fhir:v "Stool = Fecal" ]       ] )     ] )
  ] . #