Publish-box (todo)
Clinical Genomics Work Group | Maturity Level: N/A | Standards Status: Informative | Compartments: No defined compartments |
Raw XML (canonical form + also see XML Format Specification)
Simple sequence example (id = "example")
<?xml version="1.0" encoding="UTF-8"?> <MolecularDefinition xmlns="http://hl7.org/fhir"> <id value="example"/> <type value="dna"/> <!-- <subject> <reference value="Patient/example"/> </subject> --> <!-- <formatted> <contentType value="application/json"/> <url value="http://grch37.rest.ensembl.org/ga4gh/variants/3:rs1333049?content-typ e=application/json"/> <title value="GA4GH API"/> </formatted> --> <!-- <repeated> <sequenceMotif> <reference value="MolecularDefinition/SequenceMotifExample"/> <type value="MolecularDefinition"/> <display value="Sequence Motif Resource"/> </sequenceMotif> <copyCount value="5"/> </repeated> --> <representation> <!-- <encoding> <coding> <system value="http://terminology.hl7.org/CodeSystem/..."/> <code value=""/> <display value=""/> </coding> <text value=""/> </encoding> --> <literal> <value value="ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACC AGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGAC CCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTAT GG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATT TGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCA CAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGC TCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTT TTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGG TTGGTCAGAAAGA"/> </literal> <resolvable> <contentType value="text/html"/> <url value="https://www.ncbi.nlm.nih.gov/nuccore/MW716256.1?report=fasta"/> </resolvable> <extracted> <startingMolecule> <reference value="MolecularDefinition/example-starting-sequence-2b-extracted"/> <type value="MolecularDefinition"/> <display value="Starting Sequence Resource"/> </startingMolecule> <start value="0"/> <end value="745"/> <coordinateSystem> <coding> <system value="http://loinc.org"/> <code value="LA30100-4"/> <display value="0-based interval counting"/> </coding> <text value="0-based interval counting"/> </coordinateSystem> <reverseComplement value="false"/> </extracted> <concatenated> <sequenceElement> <sequence> <reference value="MolecularDefinition/example-sequence0-2b-concatenated"/> <type value="MolecularDefinition"/> <display value="Sequence-of index 0-Resource for concatenated sequence example"/> </sequence> <ordinalIndex value="0"/> </sequenceElement> <sequenceElement> <sequence> <reference value="MolecularDefinition/example-sequence1-2b-concatenated"/> <type value="MolecularDefinition"/> <display value="Sequence-of index 1-Resource for concatenated sequence example"/> </sequence> <ordinalIndex value="1"/> </sequenceElement> <sequenceElement> <sequence> <reference value="MolecularDefinition/example-sequence2-2b-concatenated"/> <type value="MolecularDefinition"/> <display value="Sequence-of index 2-Resource for concatenated sequence example"/> </sequence> <ordinalIndex value="2"/> </sequenceElement> </concatenated> <relative> <startingMolecule> <reference value="MolecularDefinition/example-starting-sequence-2b-relative"/> <type value="MolecularDefinition"/> <display value="Starting Sequence Resource"/> </startingMolecule> <edit> <coordinateSystem> <coding> <system value="http://loinc.org"/> <code value="LA30100-4"/> <display value="0-based interval counting"/> </coding> <text value="0-based interval counting"/> </coordinateSystem> <start value="0"/> <end value="725"/> <replacementMolecule> <reference value="MolecularDefinition/example-replacement-sequence"/> <type value="MolecularDefinition"/> <display value="Replacement Sequence Resource"/> </replacementMolecule> <replacedMolecule> <reference value="MolecularDefinition/example-replaced-sequence"/> <type value="MolecularDefinition"/> <display value="Replaced Sequence Resource"/> </replacedMolecule> </edit> </relative> </representation> </MolecularDefinition>
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.
FHIR ®© HL7.org 2011+. FHIR R6 hl7.fhir.core#6.0.0-ballot2 generated on Mon, Aug 12, 2024 16:59+0800.
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