Simple sequence example
{
"resourceType" : "MolecularDefinition",
"id" : "example",
"type" : "dna",
"representation" : [{
"literal" : {
"value" : "ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA"
},
"resolvable" : {
"contentType" : "text/html",
"url" : "https://www.ncbi.nlm.nih.gov/nuccore/MW716256.1?report=fasta"
},
"extracted" : {
"startingMolecule" : {
"reference" : "MolecularDefinition/example-starting-sequence-2b-extracted",
"type" : "MolecularDefinition",
"display" : "Starting Sequence Resource"
},
"start" : 0,
"end" : 745,
"coordinateSystem" : {
"coding" : [{
"system" : "http://loinc.org",
"code" : "LA30100-4",
"display" : "0-based interval counting"
}],
"text" : "0-based interval counting"
},
"reverseComplement" : false
},
"concatenated" : {
"sequenceElement" : [{
"sequence" : {
"reference" : "MolecularDefinition/example-sequence0-2b-concatenated",
"type" : "MolecularDefinition",
"display" : "Sequence-of index 0-Resource for concatenated sequence example"
},
"ordinalIndex" : 0
},
{
"sequence" : {
"reference" : "MolecularDefinition/example-sequence1-2b-concatenated",
"type" : "MolecularDefinition",
"display" : "Sequence-of index 1-Resource for concatenated sequence example"
},
"ordinalIndex" : 1
},
{
"sequence" : {
"reference" : "MolecularDefinition/example-sequence2-2b-concatenated",
"type" : "MolecularDefinition",
"display" : "Sequence-of index 2-Resource for concatenated sequence example"
},
"ordinalIndex" : 2
}]
},
"relative" : {
"startingMolecule" : {
"reference" : "MolecularDefinition/example-starting-sequence-2b-relative",
"type" : "MolecularDefinition",
"display" : "Starting Sequence Resource"
},
"edit" : [{
"coordinateSystem" : {
"coding" : [{
"system" : "http://loinc.org",
"code" : "LA30100-4",
"display" : "0-based interval counting"
}],
"text" : "0-based interval counting"
},
"start" : 0,
"end" : 725,
"replacementMolecule" : {
"reference" : "MolecularDefinition/example-replacement-sequence",
"type" : "MolecularDefinition",
"display" : "Replacement Sequence Resource"
},
"replacedMolecule" : {
"reference" : "MolecularDefinition/example-replaced-sequence",
"type" : "MolecularDefinition",
"display" : "Replaced Sequence Resource"
}
}]
}
}]
}
Usage note: every effort has been made to ensure that the
examples are correct and useful, but they are not a normative part
of the specification.