This page is part of the FHIR Specification (v5.0.0: R5 - STU). This is the current published version. For a full list of available versions, see the Directory of published versions
Clinical Genomics Work Group | Maturity Level: 1 | Trial Use | Use Context: Country: World, Not yet ready for Production use |
Official URL: http://hl7.org/fhir/ValueSet/genomicstudy-dataformat
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Version: 5.0.0 | |||
draft as of 2022-08-18 | Computable Name: GenomicStudyDataFormat | |||
Flags: Experimental | OID: 2.16.840.1.113883.4.642.3.3084 |
This value set is used in the following places:
The data formats relevant to Genomic Study analysis.
http://hl7.org/fhir/genomicstudy-dataformat
This expansion generated 26 Mar 2023
This value set contains 40 concepts
Expansion based on Genomic Study Data Format v5.0.0 (CodeSystem)
Code | System | Display |
bam | http://hl7.org/fhir/genomicstudy-dataformat | BAM |
bed | http://hl7.org/fhir/genomicstudy-dataformat | BED |
bedpe | http://hl7.org/fhir/genomicstudy-dataformat | BEDPE |
bedgraph | http://hl7.org/fhir/genomicstudy-dataformat | BedGraph |
bigbed | http://hl7.org/fhir/genomicstudy-dataformat | bigBed |
bigWig | http://hl7.org/fhir/genomicstudy-dataformat | bigWig |
birdsuite-files | http://hl7.org/fhir/genomicstudy-dataformat | Birdsuite-Files |
broadpeak | http://hl7.org/fhir/genomicstudy-dataformat | broadPeak |
cbs | http://hl7.org/fhir/genomicstudy-dataformat | CBS |
chemical-reactivity-probing-profiles | http://hl7.org/fhir/genomicstudy-dataformat | Chemical-Reactivity-Probing-Profiles |
chrom-sizes | http://hl7.org/fhir/genomicstudy-dataformat | chrom-sizes |
cn | http://hl7.org/fhir/genomicstudy-dataformat | CN |
custom-file-formats | http://hl7.org/fhir/genomicstudy-dataformat | Custom-File-Formats |
cytoband | http://hl7.org/fhir/genomicstudy-dataformat | Cytoband |
fasta | http://hl7.org/fhir/genomicstudy-dataformat | FASTA |
gct | http://hl7.org/fhir/genomicstudy-dataformat | GCT |
cram | http://hl7.org/fhir/genomicstudy-dataformat | CRAM |
genepred | http://hl7.org/fhir/genomicstudy-dataformat | genePred |
gff-gtf | http://hl7.org/fhir/genomicstudy-dataformat | GFF/GTF |
gistic | http://hl7.org/fhir/genomicstudy-dataformat | GISTIC |
goby | http://hl7.org/fhir/genomicstudy-dataformat | Goby |
gwas | http://hl7.org/fhir/genomicstudy-dataformat | GWAS |
igv | http://hl7.org/fhir/genomicstudy-dataformat | IGV |
loh | http://hl7.org/fhir/genomicstudy-dataformat | LOH |
maf-multiple-alignment-format | http://hl7.org/fhir/genomicstudy-dataformat | MAF-Multiple Alignment Format |
maf-mutation-annotation-format | http://hl7.org/fhir/genomicstudy-dataformat | MAF-Mutation-Annotation-Format |
merged-bam-file | http://hl7.org/fhir/genomicstudy-dataformat | Merged BAM File |
mut | http://hl7.org/fhir/genomicstudy-dataformat | MUT |
narrowpeak | http://hl7.org/fhir/genomicstudy-dataformat | narrowPeak |
psl | http://hl7.org/fhir/genomicstudy-dataformat | PSL |
res | http://hl7.org/fhir/genomicstudy-dataformat | RES |
rna-secondary-structure-formats | http://hl7.org/fhir/genomicstudy-dataformat | RNA-Secondary-Structure-Formats |
sam | http://hl7.org/fhir/genomicstudy-dataformat | SAM |
sample-info-attributes-file | http://hl7.org/fhir/genomicstudy-dataformat | Sample-Info-Attributes-file |
seg | http://hl7.org/fhir/genomicstudy-dataformat | SEG |
tdf | http://hl7.org/fhir/genomicstudy-dataformat | TDF |
track-line | http://hl7.org/fhir/genomicstudy-dataformat | Track Line |
type-line | http://hl7.org/fhir/genomicstudy-dataformat | Type Line |
vcf | http://hl7.org/fhir/genomicstudy-dataformat | VCF |
wig | http://hl7.org/fhir/genomicstudy-dataformat | WIG |
See the full registry of value sets defined as part of FHIR.
Explanation of the columns that may appear on this page:
Lvl | A few code lists that FHIR defines are hierarchical - each code is assigned a level. For value sets, levels are mostly used to organize codes for user convenience, but may follow code system hierarchy - see Code System for further information |
Source | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
Code | The code (used as the code in the resource instance). If the code is in italics, this indicates that the code is not selectable ('Abstract') |
Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
Definition | An explanation of the meaning of the concept |
Comments | Additional notes about how to use the code |