FHIR Cross-Version Extensions package for FHIR R4 from FHIR R5 - Version 0.0.1-snapshot-2. See the Directory of published versions
Page standards status: Informative | Maturity Level: 1 |
<ValueSet xmlns="http://hl7.org/fhir">
<id value="R5-genomicstudy-dataformat-for-R4"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ValueSet R5-genomicstudy-dataformat-for-R4</b></p><a name="R5-genomicstudy-dataformat-for-R4"> </a><a name="hcR5-genomicstudy-dataformat-for-R4"> </a><p>This value set expansion contains 40 concepts.</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>System</b></td><td><b>Display</b></td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-bam"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-bam">bam</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>BAM</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-bed"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-bed">bed</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>BED</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-bedpe"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-bedpe">bedpe</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>BEDPE</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-bedgraph"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-bedgraph">bedgraph</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>BedGraph</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-bigbed"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-bigbed">bigbed</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>bigBed</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-bigWig"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-bigWig">bigWig</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>bigWig</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-birdsuite-files"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-birdsuite-files">birdsuite-files</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>Birdsuite-Files</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-broadpeak"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-broadpeak">broadpeak</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>broadPeak</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-cbs"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-cbs">cbs</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>CBS</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-chemical-reactivity-probing-profiles"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-chemical-reactivity-probing-profiles">chemical-reactivity-probing-profiles</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>Chemical-Reactivity-Probing-Profiles</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-chrom-sizes"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-chrom-sizes">chrom-sizes</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>chrom-sizes</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-cn"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-cn">cn</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>CN</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-custom-file-formats"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-custom-file-formats">custom-file-formats</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>Custom-File-Formats</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-cytoband"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-cytoband">cytoband</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>Cytoband</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-fasta"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-fasta">fasta</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>FASTA</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-gct"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-gct">gct</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>GCT</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-cram"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-cram">cram</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>CRAM</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-genepred"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-genepred">genepred</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>genePred</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-gff-gtf"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-gff-gtf">gff-gtf</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>GFF/GTF</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-gistic"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-gistic">gistic</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>GISTIC</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-goby"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-goby">goby</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>Goby</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-gwas"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-gwas">gwas</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>GWAS</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-igv"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-igv">igv</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>IGV</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-loh"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-loh">loh</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>LOH</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-maf-multiple-alignment-format"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-maf-multiple-alignment-format">maf-multiple-alignment-format</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>MAF-Multiple Alignment Format</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-maf-mutation-annotation-format"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-maf-mutation-annotation-format">maf-mutation-annotation-format</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>MAF-Mutation-Annotation-Format</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-merged-bam-file"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-merged-bam-file">merged-bam-file</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>Merged BAM File</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-mut"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-mut">mut</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>MUT</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-narrowpeak"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-narrowpeak">narrowpeak</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>narrowPeak</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-psl"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-psl">psl</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>PSL</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-res"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-res">res</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>RES</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-rna-secondary-structure-formats"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-rna-secondary-structure-formats">rna-secondary-structure-formats</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>RNA-Secondary-Structure-Formats</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-sam"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-sam">sam</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>SAM</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-sample-info-attributes-file"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-sample-info-attributes-file">sample-info-attributes-file</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>Sample-Info-Attributes-file</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-seg"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-seg">seg</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>SEG</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-tdf"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-tdf">tdf</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>TDF</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-track-line"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-track-line">track-line</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>Track Line</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-type-line"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-type-line">type-line</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>Type Line</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-vcf"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-vcf">vcf</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>VCF</td></tr><tr><td style="white-space:nowrap"><a name="R5-genomicstudy-dataformat-for-R4-http://hl7.org/fhir/genomicstudy-dataformat-wig"> </a> <a href="CodeSystem-genomicstudy-dataformat.html#genomicstudy-dataformat-wig">wig</a></td><td>http://hl7.org/fhir/genomicstudy-dataformat</td><td>WIG</td></tr></table></div>
</text>
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<valueCode value="cg"/>
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<extension url="http://hl7.org/fhir/StructureDefinition/package-source">
<extension url="packageId">
<valueId value="hl7.fhir.uv.xver-r5.r4"/>
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<extension url="version">
<valueString value="0.0.1-snapshot-2"/>
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<extension
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<valueCode value="informative">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/5.0/ImplementationGuide/hl7.fhir.uv.xver-r5.r4"/>
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<url
value="http://hl7.org/fhir/5.0/ValueSet/R5-genomicstudy-dataformat-for-R4"/>
<version value="0.0.1-snapshot-2"/>
<name value="R5_genomicstudy_dataformat_for_R4"/>
<title
value="Cross-version VS for R5.GenomicStudyDataFormat for use in FHIR R4"/>
<status value="active"/>
<experimental value="false"/>
<date value="2025-09-01T22:37:02.540849+10:00"/>
<publisher value="Clinical Genomics"/>
<contact>
<name value="Clinical Genomics"/>
<telecom>
<system value="url"/>
<value value="http://www.hl7.org/Special/committees/clingenomics"/>
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<description
value="This cross-version ValueSet represents concepts from http://hl7.org/fhir/ValueSet/genomicstudy-dataformat|5.0.0 for use in FHIR R4. Concepts not present here have direct `equivalent` mappings crossing all versions from R5 to R4."/>
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<display value="World"/>
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<compose>
<include>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<concept>
<code value="bam"/>
<display value="BAM"/>
</concept>
<concept>
<code value="bed"/>
<display value="BED"/>
</concept>
<concept>
<code value="bedpe"/>
<display value="BEDPE"/>
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<concept>
<code value="bedgraph"/>
<display value="BedGraph"/>
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<concept>
<code value="bigbed"/>
<display value="bigBed"/>
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<concept>
<code value="bigWig"/>
<display value="bigWig"/>
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<concept>
<code value="birdsuite-files"/>
<display value="Birdsuite-Files"/>
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<concept>
<code value="broadpeak"/>
<display value="broadPeak"/>
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<concept>
<code value="cbs"/>
<display value="CBS"/>
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<concept>
<code value="chemical-reactivity-probing-profiles"/>
<display value="Chemical-Reactivity-Probing-Profiles"/>
</concept>
<concept>
<code value="chrom-sizes"/>
<display value="chrom-sizes"/>
</concept>
<concept>
<code value="cn"/>
<display value="CN"/>
</concept>
<concept>
<code value="custom-file-formats"/>
<display value="Custom-File-Formats"/>
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<concept>
<code value="cytoband"/>
<display value="Cytoband"/>
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<concept>
<code value="fasta"/>
<display value="FASTA"/>
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<concept>
<code value="gct"/>
<display value="GCT"/>
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<concept>
<code value="cram"/>
<display value="CRAM"/>
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<concept>
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<display value="genePred"/>
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<concept>
<code value="gff-gtf"/>
<display value="GFF/GTF"/>
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<concept>
<code value="gistic"/>
<display value="GISTIC"/>
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<concept>
<code value="goby"/>
<display value="Goby"/>
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<concept>
<code value="gwas"/>
<display value="GWAS"/>
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<concept>
<code value="igv"/>
<display value="IGV"/>
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<concept>
<code value="loh"/>
<display value="LOH"/>
</concept>
<concept>
<code value="maf-multiple-alignment-format"/>
<display value="MAF-Multiple Alignment Format"/>
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<concept>
<code value="maf-mutation-annotation-format"/>
<display value="MAF-Mutation-Annotation-Format"/>
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<concept>
<code value="merged-bam-file"/>
<display value="Merged BAM File"/>
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<concept>
<code value="mut"/>
<display value="MUT"/>
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<concept>
<code value="narrowpeak"/>
<display value="narrowPeak"/>
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<concept>
<code value="psl"/>
<display value="PSL"/>
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<concept>
<code value="res"/>
<display value="RES"/>
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<concept>
<code value="rna-secondary-structure-formats"/>
<display value="RNA-Secondary-Structure-Formats"/>
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<concept>
<code value="sam"/>
<display value="SAM"/>
</concept>
<concept>
<code value="sample-info-attributes-file"/>
<display value="Sample-Info-Attributes-file"/>
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<concept>
<code value="seg"/>
<display value="SEG"/>
</concept>
<concept>
<code value="tdf"/>
<display value="TDF"/>
</concept>
<concept>
<code value="track-line"/>
<display value="Track Line"/>
</concept>
<concept>
<code value="type-line"/>
<display value="Type Line"/>
</concept>
<concept>
<code value="vcf"/>
<display value="VCF"/>
</concept>
<concept>
<code value="wig"/>
<display value="WIG"/>
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</include>
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<expansion>
<timestamp value="2025-09-01T22:37:02.54084+10:00"/>
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<code value="bam"/>
<display value="BAM"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="bed"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="bedpe"/>
<display value="BEDPE"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="bedgraph"/>
<display value="BedGraph"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="bigbed"/>
<display value="bigBed"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="bigWig"/>
<display value="bigWig"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="birdsuite-files"/>
<display value="Birdsuite-Files"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="broadpeak"/>
<display value="broadPeak"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="cbs"/>
<display value="CBS"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="chemical-reactivity-probing-profiles"/>
<display value="Chemical-Reactivity-Probing-Profiles"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="chrom-sizes"/>
<display value="chrom-sizes"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="cn"/>
<display value="CN"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="custom-file-formats"/>
<display value="Custom-File-Formats"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="cytoband"/>
<display value="Cytoband"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="fasta"/>
<display value="FASTA"/>
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<contains>
<system value="http://hl7.org/fhir/genomicstudy-dataformat"/>
<version value="5.0.0"/>
<code value="gct"/>
<display value="GCT"/>
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