This page is part of the Genetic Reporting Implementation Guide (v0.1.0: STU 1 Ballot 1) based on FHIR v3.3.0. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

Value Set /ValueSet/genetic-coordinate-system

Summary

Defining URL:http://hl7.org/fhir/uv/genomics-reporting/ValueSet/genetic-coordinate-system
Name:GeneticCoordinateSystem
Definition:

Base coordinate systems start and end measurements for variants

Source ResourceXML / JSON / Turtle

This value set is not used

.1 Content Logical Definition

GeneticCoordinateSystem

Base coordinate systems start and end measurements for variants

This value set includes codes from the following code systems:

 

.2 Expansion

This value set contains 2 concepts

Expansion based on http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genetic-coordinate-system version 2018may

All codes from system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genetic-coordinate-system

CodeDisplayDefinition
00-based0-based numbering or interbase coordinate system, inclusive start, exclusive end
11-based1 for 1-based numbering or base coordinate system, inclusive start, inclusive end

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
Source The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code