This page is part of the Genetic Reporting Implementation Guide (v0.1.0: STU 1 Ballot 1) based on FHIR v3.3.0. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions 
@prefix fhir: <http://hl7.org/fhir/> . @prefix loinc: <http://loinc.org/rdf#> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource ------------------------------------------------------------------- a fhir:Bundle; fhir:nodeRole fhir:treeRoot; fhir:Resource.id [ fhir:value "diagnosticreport-pgxexample"]; fhir:Bundle.type [ fhir:value "collection"]; fhir:Bundle.entry [ fhir:index 0; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/DiagnosticReport/pgx-report" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/DiagnosticReport/pgx-report> ], [ fhir:index 1; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Patient/patient" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Patient/patient> ], [ fhir:index 2; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Specimen/specimen" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Specimen/specimen> ], [ fhir:index 3; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Organization/lab" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Organization/lab> ], [ fhir:index 4; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/ServiceRequest/pgx-request" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/ServiceRequest/pgx-request> ], [ fhir:index 5; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Observation/med-impact-pgx-example" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Observation/med-impact-pgx-example> ], [ fhir:index 6; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Observation/genotype-pgx-example" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Observation/genotype-pgx-example> ], [ fhir:index 7; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Observation/haplotype-1-pgx-example" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Observation/haplotype-1-pgx-example> ], [ fhir:index 8; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Observation/haplotype-2-pgx-example" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Observation/haplotype-2-pgx-example> ], [ fhir:index 9; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Observation/variant-1-pgx-example" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Observation/variant-1-pgx-example> ], [ fhir:index 10; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Observation/variant-2-pgx-example" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Observation/variant-2-pgx-example> ], [ fhir:index 11; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Sequence/sequence-1-pgx-example" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Sequence/sequence-1-pgx-example> ], [ fhir:index 12; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Sequence/sequence-2-pgx-example" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Sequence/sequence-2-pgx-example> ], [ fhir:index 13; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/Task/med-usage-impact-task-pgx-example" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/Task/med-usage-impact-task-pgx-example> ], [ fhir:index 14; fhir:Bundle.entry.fullUrl [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/MedicationStatement/current-med-example" ]; fhir:Bundle.entry.resource <http://hl7.org/fhir/uv/genomics-reporting/MedicationStatement/current-med-example> ]. <http://hl7.org/fhir/uv/genomics-reporting/DiagnosticReport/pgx-report> a fhir:DiagnosticReport; fhir:Resource.id [ fhir:value "pgx-report"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnosticreport"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnosticreport> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>to do (to do) to do</h2><table class=\"grid\"><tr><td>Unable to get Patient Details</td><td><b>Report Details</b><br/> to do to do to do to do to do to do</td></tr></table><table class=\"none\"/><p><b>Coded Diagnoses :</b></p></div>" ]; fhir:DomainResource.extension [ fhir:index 0; fhir:Extension.url [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/dr-recommendedAction" ]; fhir:Extension.valueReference [ fhir:Reference.reference [ fhir:value "Task/med-usage-impact-task-pgx-example" ] ] ]; fhir:DiagnosticReport.basedOn [ fhir:index 0; fhir:Reference.reference [ fhir:value "ServiceRequest/pgx-request" ] ]; fhir:DiagnosticReport.status [ fhir:value "final"]; fhir:DiagnosticReport.category [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://hl7.org/fhir/v2/0074" ]; fhir:Coding.code [ fhir:value "GE" ]; fhir:Coding.display [ fhir:value "Genetics" ] ] ]; fhir:DiagnosticReport.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:81247-9; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "81247-9" ] ] ]; fhir:DiagnosticReport.subject [ fhir:Reference.reference [ fhir:value "Patient/patient" ] ]; fhir:DiagnosticReport.effectiveDateTime [ fhir:value "2016"^^xsd:gYear]; fhir:DiagnosticReport.issued [ fhir:value "2018-03-06T00:00:00-05:00"^^xsd:dateTime]; fhir:DiagnosticReport.performer [ fhir:index 0; fhir:Reference.reference [ fhir:value "Organization/lab" ] ]; fhir:DiagnosticReport.result [ fhir:index 0; fhir:Reference.reference [ fhir:value "Observation/med-impact-pgx-example" ]; fhir:Reference.display [ fhir:value "genetics impact for medication metabolism accessment" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "Observation/genotype-pgx-example" ] ], [ fhir:index 2; fhir:Reference.reference [ fhir:value "Observation/haplotype-1-pgx-example" ] ], [ fhir:index 3; fhir:Reference.reference [ fhir:value "Observation/haplotype-2-pgx-example" ] ], [ fhir:index 4; fhir:Reference.reference [ fhir:value "Observation/variant-1-pgx-example" ] ], [ fhir:index 5; fhir:Reference.reference [ fhir:value "Observation/variant-2-pgx-example" ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Patient/patient> a fhir:Patient; fhir:Resource.id [ fhir:value "patient"]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "additional" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">This would contain patient identifiers, demographics, etc.</div>" ]. <http://hl7.org/fhir/uv/genomics-reporting/Specimen/specimen> a fhir:Specimen; fhir:Resource.id [ fhir:value "specimen"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/specimen"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/specimen> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">TODO</div>" ]; fhir:Specimen.subject [ fhir:Reference.reference [ fhir:value "Patient/patient" ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Organization/lab> a fhir:Organization; fhir:Resource.id [ fhir:value "lab"]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">TODO</div>" ]; fhir:Organization.name [ fhir:value "Some lab"]. <http://hl7.org/fhir/uv/genomics-reporting/ServiceRequest/pgx-request> a fhir:ServiceRequest; fhir:Resource.id [ fhir:value "pgx-request"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/servicerequest"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/servicerequest> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">TODO</div>" ]; fhir:ServiceRequest.status [ fhir:value "active"]; fhir:ServiceRequest.intent [ fhir:value "original-order"]; fhir:ServiceRequest.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:81247-9; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "81247-9" ] ] ]; fhir:ServiceRequest.subject [ fhir:Reference.reference [ fhir:value "Patient/patient" ] ]; fhir:ServiceRequest.reasonCode [ fhir:index 0; fhir:CodeableConcept.text [ fhir:value "Worried about family planning" ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Observation/med-impact-pgx-example> a fhir:Observation; fhir:Resource.id [ fhir:value "med-impact-pgx-example"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-metabolism"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-metabolism> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>text</b>: </p><p><b>status</b>: FINAL</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow\">(Details : {http://hl7.org/fhir/observation-category code 'laboratory' = 'Laboratory)</span></p><p><b>code</b>: Genetic variation's effect on drug metabolism <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '53040-2' = 'Genetic variation's effect on drug metabolism', given as 'Genetic variation's effect on drug metabolism'})</span></p><p><b>subject</b>: <a href=\"#patient_patient\">This would contain patient identifiers, demographics, etc.Generated Summary: </a></p><p><b>effective</b>: 01/01/2018</p><p><b>issued</b>: 06/03/2018 12:00:00 AM</p><p><b>performer</b>: <a href=\"#organization_lab\">TODOGenerated Summary: name: Some lab</a></p><p><b>value</b>: Rapid metabolizer <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code 'LA25390-8' = 'LA25390-8', given as 'Rapid metabolizer'})</span></p><p><b>derivedFrom</b>: <a href=\"#observation_genotype-pgx-example\">Generated Summary: <span title=\"Codes: {http://hl7.org/fhir/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 84413-4}\">genotype display name</span>; effective: 01/01/2018; issued: 06/03/2018 12:00:00 AM; value: *4/*35B</a></p><h3>Components</h3><table class=\"grid\"><tr><td>-</td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td>*</td><td>Medication assessed <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '51963-7' = 'Medication assessed [ID]', given as 'Medication assessed'})</span></td><td>6-mercaptopurine <span style=\"background: LightGoldenRodYellow\">(Details : {RxNorm code '103' = 'mercaptopurine', given as '6-mercaptopurine'})</span></td><td>Medication assessed <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '51963-7' = 'Medication assessed [ID]', given as 'Medication assessed'})</span></td><td>6-mercaptopurine <span style=\"background: LightGoldenRodYellow\">(Details : {RxNorm code '103' = 'mercaptopurine', given as '6-mercaptopurine'})</span></td><td>Medication assessed <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '51963-7' = 'Medication assessed [ID]', given as 'Medication assessed'})</span></td><td>6-mercaptopurine <span style=\"background: LightGoldenRodYellow\">(Details : {RxNorm code '103' = 'mercaptopurine', given as '6-mercaptopurine'})</span></td></tr></table></div>" ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.category [ fhir:index 0; fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://hl7.org/fhir/observation-category" ]; fhir:Coding.code [ fhir:value "laboratory" ] ] ]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:53040-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "53040-2" ]; fhir:Coding.display [ fhir:value "Genetic variation's effect on drug metabolism" ] ] ]; fhir:Observation.subject [ fhir:Reference.reference [ fhir:value "Patient/patient" ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2018"^^xsd:gYear]; fhir:Observation.issued [ fhir:value "2018-03-06T00:00:00-05:00"^^xsd:dateTime]; fhir:Observation.performer [ fhir:index 0; fhir:Reference.reference [ fhir:value "Organization/lab" ] ]; fhir:Observation.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA25390-8; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA25390-8" ]; fhir:Coding.display [ fhir:value "Rapid metabolizer" ] ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "Observation/genotype-pgx-example" ] ]; fhir:Observation.component [ fhir:index 0; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:51963-7; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "51963-7" ]; fhir:Coding.display [ fhir:value "Medication assessed" ] ] ]; fhir:Observation.component.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.nlm.nih.gov/research/umls/rxnorm" ]; fhir:Coding.code [ fhir:value "103" ]; fhir:Coding.display [ fhir:value "6-mercaptopurine" ] ] ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Observation/genotype-pgx-example> a fhir:Observation; fhir:Resource.id [ fhir:value "genotype-pgx-example"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-genotype"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-genotype> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>text</b>: </p><p><b>status</b>: FINAL</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow\">(Details : {http://hl7.org/fhir/observation-category code 'laboratory' = 'Laboratory)</span></p><p><b>code</b>: genotype display name <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '84413-4' = 'Genotype display name', given as 'genotype display name'})</span></p><p><b>effective</b>: 01/01/2018</p><p><b>issued</b>: 06/03/2018 12:00:00 AM</p><p><b>value</b>: *4/*35B</p><p><b>specimen</b>: <a href=\"#specimen_specimen\">TODOGenerated Summary: </a></p><p><b>derivedFrom</b>: </p><ul><li><a href=\"#observation_haplotype-1-pgx-example\">Generated Summary: <span title=\"Codes: {http://hl7.org/fhir/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 84414-2}\">Haplotype Name</span>; effective: 01/01/2018; issued: 06/03/2018 12:00:00 AM; value: *35B</a></li><li><a href=\"#observation_haplotype-2-pgx-example\">Generated Summary: <span title=\"Codes: {http://hl7.org/fhir/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 84414-2}\">Haplotype Name</span>; effective: 01/01/2018; issued: 06/03/2018 12:00:00 AM; value: *4</a></li></ul><h3>Components</h3><table class=\"grid\"><tr><td>-</td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td>*</td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td></tr></table></div>" ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.category [ fhir:index 0; fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://hl7.org/fhir/observation-category" ]; fhir:Coding.code [ fhir:value "laboratory" ] ] ]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:84413-4; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "84413-4" ]; fhir:Coding.display [ fhir:value "genotype display name" ] ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2018"^^xsd:gYear]; fhir:Observation.issued [ fhir:value "2018-03-06T00:00:00-05:00"^^xsd:dateTime]; fhir:Observation.valueString [ fhir:value "*4/*35B"]; fhir:Observation.specimen [ fhir:Reference.reference [ fhir:value "Specimen/specimen" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "Observation/haplotype-1-pgx-example" ] ], [ fhir:index 1; fhir:Reference.reference [ fhir:value "Observation/haplotype-2-pgx-example" ] ]; fhir:Observation.component [ fhir:index 0; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:48018-6; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "48018-6" ]; fhir:Coding.display [ fhir:value "Gene studied ID" ] ] ]; fhir:Observation.component.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "2623" ]; fhir:Coding.display [ fhir:value "CYP2C9" ] ] ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Observation/haplotype-1-pgx-example> a fhir:Observation; fhir:Resource.id [ fhir:value "haplotype-1-pgx-example"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-haplotype"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-haplotype> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>text</b>: </p><p><b>status</b>: FINAL</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow\">(Details : {http://hl7.org/fhir/observation-category code 'laboratory' = 'Laboratory)</span></p><p><b>code</b>: Haplotype Name <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '84414-2' = 'Haplotype name', given as 'Haplotype Name'})</span></p><p><b>effective</b>: 01/01/2018</p><p><b>issued</b>: 06/03/2018 12:00:00 AM</p><p><b>value</b>: *35B</p><p><b>specimen</b>: <a href=\"#specimen_specimen\">TODOGenerated Summary: </a></p><p><b>derivedFrom</b>: <a href=\"#observation_variant-1-pgx-example\">Generated Summary: <span title=\"Codes: {http://hl7.org/fhir/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org TBD-Described}\">Genetic variant assessment</span>; effective: 01/01/2018; issued: 06/03/2018 12:00:00 AM; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span></a></p><h3>Components</h3><table class=\"grid\"><tr><td>-</td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td>*</td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td></tr></table></div>" ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.category [ fhir:index 0; fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://hl7.org/fhir/observation-category" ]; fhir:Coding.code [ fhir:value "laboratory" ] ] ]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:84414-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "84414-2" ]; fhir:Coding.display [ fhir:value "Haplotype Name" ] ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2018"^^xsd:gYear]; fhir:Observation.issued [ fhir:value "2018-03-06T00:00:00-05:00"^^xsd:dateTime]; fhir:Observation.valueString [ fhir:value "*35B"]; fhir:Observation.specimen [ fhir:Reference.reference [ fhir:value "Specimen/specimen" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "Observation/variant-1-pgx-example" ] ]; fhir:Observation.component [ fhir:index 0; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:48018-6; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "48018-6" ]; fhir:Coding.display [ fhir:value "Gene studied ID" ] ] ]; fhir:Observation.component.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "2623" ]; fhir:Coding.display [ fhir:value "CYP2C9" ] ] ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Observation/haplotype-2-pgx-example> a fhir:Observation; fhir:Resource.id [ fhir:value "haplotype-2-pgx-example"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-haplotype"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-haplotype> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>text</b>: </p><p><b>status</b>: FINAL</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow\">(Details : {http://hl7.org/fhir/observation-category code 'laboratory' = 'Laboratory)</span></p><p><b>code</b>: Haplotype Name <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '84414-2' = 'Haplotype name', given as 'Haplotype Name'})</span></p><p><b>effective</b>: 01/01/2018</p><p><b>issued</b>: 06/03/2018 12:00:00 AM</p><p><b>value</b>: *4</p><p><b>specimen</b>: <a href=\"#specimen_specimen\">TODOGenerated Summary: </a></p><p><b>derivedFrom</b>: <a href=\"#observation_variant-2-pgx-example\">Generated Summary: <span title=\"Codes: {http://hl7.org/fhir/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org TBD-Described}\">Genetic variant assessment</span>; effective: 01/01/2018; issued: 06/03/2018 12:00:00 AM; <span title=\"Codes: {http://loinc.org LA9633-4}\">Present</span></a></p><h3>Components</h3><table class=\"grid\"><tr><td>-</td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td>*</td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td><td>Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></td><td>CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></td></tr></table></div>" ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.category [ fhir:index 0; fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://hl7.org/fhir/observation-category" ]; fhir:Coding.code [ fhir:value "laboratory" ] ] ]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:84414-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "84414-2" ]; fhir:Coding.display [ fhir:value "Haplotype Name" ] ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2018"^^xsd:gYear]; fhir:Observation.issued [ fhir:value "2018-03-06T00:00:00-05:00"^^xsd:dateTime]; fhir:Observation.valueString [ fhir:value "*4"]; fhir:Observation.specimen [ fhir:Reference.reference [ fhir:value "Specimen/specimen" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "Observation/variant-2-pgx-example" ] ]; fhir:Observation.component [ fhir:index 0; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:48018-6; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "48018-6" ]; fhir:Coding.display [ fhir:value "Gene studied ID" ] ] ]; fhir:Observation.component.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "2623" ]; fhir:Coding.display [ fhir:value "CYP2C9" ] ] ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Observation/variant-1-pgx-example> a fhir:Observation; fhir:Resource.id [ fhir:value "variant-1-pgx-example"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-described-variant"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-described-variant> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>text</b>: </p><p><b>status</b>: FINAL</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow\">(Details : {http://hl7.org/fhir/observation-category code 'laboratory' = 'Laboratory)</span></p><p><b>code</b>: Genetic variant assessment <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code 'TBD-Described' = 'TBD-Described', given as 'Genetic variant assessment'})</span></p><p><b>effective</b>: 01/01/2018</p><p><b>issued</b>: 06/03/2018 12:00:00 AM</p><p><b>value</b>: Present <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code 'LA9633-4' = 'LA9633-4', given as 'Present'})</span></p><p><b>specimen</b>: <a href=\"#specimen_specimen\">TODOGenerated Summary: </a></p><p><b>derivedFrom</b>: <a href=\"#sequence_sequence-1-pgx-example\">Generated Summary: DNA; 0</a></p><blockquote><p><b>component</b></p><p><b>code</b>: Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></p><p><b>value</b>: CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genomic reference sequence ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48013-7' = 'Genomic reference sequence [ID]', given as 'Genomic reference sequence ID'})</span></p><p><b>value</b>: NG_007726.3 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NG_007726.3' = 'NG_007726.3)</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: dbSNP ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '81255-2' = 'dbSNP [ID]', given as 'dbSNP ID'})</span></p><p><b>value</b>: rs12345 <span style=\"background: LightGoldenRodYellow\">(Details : {https://www.ncbi.nlm.nih.gov/SNP/ code 'rs12345' = 'rs12345)</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genomic Ref allele <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '69547-8' = 'Genomic ref allele [ID]', given as 'Genomic Ref allele'})</span></p><p><b>value</b>: T</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genomic Alt allele <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '69551-0' = 'Genomic alt allele [ID]', given as 'Genomic Alt allele'})</span></p><p><b>value</b>: G</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genomic Allele start-end <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '81254-5' = 'Genomic allele start-end', given as 'Genomic Allele start-end'})</span></p><p><b>value</b>: 55227976-55227977</p></blockquote></div>" ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.category [ fhir:index 0; fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://hl7.org/fhir/observation-category" ]; fhir:Coding.code [ fhir:value "laboratory" ] ] ]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:TBD-DESCRIBED; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "TBD-Described" ]; fhir:Coding.display [ fhir:value "Genetic variant assessment" ] ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2018"^^xsd:gYear]; fhir:Observation.issued [ fhir:value "2018-03-06T00:00:00-05:00"^^xsd:dateTime]; fhir:Observation.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA9633-4; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA9633-4" ]; fhir:Coding.display [ fhir:value "Present" ] ] ]; fhir:Observation.specimen [ fhir:Reference.reference [ fhir:value "Specimen/specimen" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "Sequence/sequence-1-pgx-example" ] ]; fhir:Observation.component [ fhir:index 0; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:48018-6; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "48018-6" ]; fhir:Coding.display [ fhir:value "Gene studied ID" ] ] ]; fhir:Observation.component.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "2623" ]; fhir:Coding.display [ fhir:value "CYP2C9" ] ] ] ], [ fhir:index 1; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:48013-7; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "48013-7" ]; fhir:Coding.display [ fhir:value "Genomic reference sequence ID" ] ] ]; fhir:Observation.component.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ncbi.nlm.nih.gov/nuccore" ]; fhir:Coding.code [ fhir:value "NG_007726.3" ] ] ] ], [ fhir:index 2; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:81255-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "81255-2" ]; fhir:Coding.display [ fhir:value "dbSNP ID" ] ] ]; fhir:Observation.component.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "https://www.ncbi.nlm.nih.gov/SNP/" ]; fhir:Coding.code [ fhir:value "rs12345" ] ] ] ], [ fhir:index 3; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:69547-8; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "69547-8" ]; fhir:Coding.display [ fhir:value "Genomic Ref allele" ] ] ]; fhir:Observation.component.valueString [ fhir:value "T" ] ], [ fhir:index 4; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:69551-0; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "69551-0" ]; fhir:Coding.display [ fhir:value "Genomic Alt allele" ] ] ]; fhir:Observation.component.valueString [ fhir:value "G" ] ], [ fhir:index 5; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:81254-5; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "81254-5" ]; fhir:Coding.display [ fhir:value "Genomic Allele start-end" ] ] ]; fhir:Observation.component.valueRange [ fhir:Range.low [ fhir:Quantity.value [ fhir:value "55227976"^^xsd:decimal ] ]; fhir:Range.high [ fhir:Quantity.value [ fhir:value "55227977"^^xsd:decimal ] ] ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Observation/variant-2-pgx-example> a fhir:Observation; fhir:Resource.id [ fhir:value "variant-2-pgx-example"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-described-variant"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/obs-described-variant> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>text</b>: </p><p><b>status</b>: FINAL</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow\">(Details : {http://hl7.org/fhir/observation-category code 'laboratory' = 'Laboratory)</span></p><p><b>code</b>: Genetic variant assessment <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code 'TBD-Described' = 'TBD-Described', given as 'Genetic variant assessment'})</span></p><p><b>effective</b>: 01/01/2018</p><p><b>issued</b>: 06/03/2018 12:00:00 AM</p><p><b>value</b>: Present <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code 'LA9633-4' = 'LA9633-4', given as 'Present'})</span></p><p><b>specimen</b>: <a href=\"#specimen_specimen\">TODOGenerated Summary: </a></p><p><b>derivedFrom</b>: <a href=\"#sequence_sequence-2-pgx-example\">Generated Summary: DNA; 0</a></p><blockquote><p><b>component</b></p><p><b>code</b>: Gene studied ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48018-6' = 'Gene studied [ID]', given as 'Gene studied ID'})</span></p><p><b>value</b>: CYP2C9 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.genenames.org code '2623' = '2623', given as 'CYP2C9'})</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genomic reference sequence ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '48013-7' = 'Genomic reference sequence [ID]', given as 'Genomic reference sequence ID'})</span></p><p><b>value</b>: NG_007726.3 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NG_007726.3' = 'NG_007726.3)</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: dbSNP ID <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '81255-2' = 'dbSNP [ID]', given as 'dbSNP ID'})</span></p><p><b>value</b>: rs233455 <span style=\"background: LightGoldenRodYellow\">(Details : {https://www.ncbi.nlm.nih.gov/SNP/ code 'rs233455' = 'rs233455)</span></p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genomic Ref allele <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '69547-8' = 'Genomic ref allele [ID]', given as 'Genomic Ref allele'})</span></p><p><b>value</b>: T</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genomic Alt allele <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '69551-0' = 'Genomic alt allele [ID]', given as 'Genomic Alt allele'})</span></p><p><b>value</b>: G</p></blockquote><blockquote><p><b>component</b></p><p><b>code</b>: Genomic Allele start-end <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code '81254-5' = 'Genomic allele start-end', given as 'Genomic Allele start-end'})</span></p><p><b>value</b>: 55227978-55227979</p></blockquote></div>" ]; fhir:Observation.status [ fhir:value "final"]; fhir:Observation.category [ fhir:index 0; fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://hl7.org/fhir/observation-category" ]; fhir:Coding.code [ fhir:value "laboratory" ] ] ]; fhir:Observation.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:TBD-DESCRIBED; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "TBD-Described" ]; fhir:Coding.display [ fhir:value "Genetic variant assessment" ] ] ]; fhir:Observation.effectiveDateTime [ fhir:value "2018"^^xsd:gYear]; fhir:Observation.issued [ fhir:value "2018-03-06T00:00:00-05:00"^^xsd:dateTime]; fhir:Observation.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA9633-4; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA9633-4" ]; fhir:Coding.display [ fhir:value "Present" ] ] ]; fhir:Observation.specimen [ fhir:Reference.reference [ fhir:value "Specimen/specimen" ] ]; fhir:Observation.derivedFrom [ fhir:index 0; fhir:Reference.reference [ fhir:value "Sequence/sequence-2-pgx-example" ] ]; fhir:Observation.component [ fhir:index 0; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:48018-6; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "48018-6" ]; fhir:Coding.display [ fhir:value "Gene studied ID" ] ] ]; fhir:Observation.component.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.genenames.org" ]; fhir:Coding.code [ fhir:value "2623" ]; fhir:Coding.display [ fhir:value "CYP2C9" ] ] ] ], [ fhir:index 1; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:48013-7; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "48013-7" ]; fhir:Coding.display [ fhir:value "Genomic reference sequence ID" ] ] ]; fhir:Observation.component.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ncbi.nlm.nih.gov/nuccore" ]; fhir:Coding.code [ fhir:value "NG_007726.3" ] ] ] ], [ fhir:index 2; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:81255-2; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "81255-2" ]; fhir:Coding.display [ fhir:value "dbSNP ID" ] ] ]; fhir:Observation.component.valueCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "https://www.ncbi.nlm.nih.gov/SNP/" ]; fhir:Coding.code [ fhir:value "rs233455" ] ] ] ], [ fhir:index 3; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:69547-8; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "69547-8" ]; fhir:Coding.display [ fhir:value "Genomic Ref allele" ] ] ]; fhir:Observation.component.valueString [ fhir:value "T" ] ], [ fhir:index 4; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:69551-0; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "69551-0" ]; fhir:Coding.display [ fhir:value "Genomic Alt allele" ] ] ]; fhir:Observation.component.valueString [ fhir:value "G" ] ], [ fhir:index 5; fhir:Observation.component.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:81254-5; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "81254-5" ]; fhir:Coding.display [ fhir:value "Genomic Allele start-end" ] ] ]; fhir:Observation.component.valueRange [ fhir:Range.low [ fhir:Quantity.value [ fhir:value "55227978"^^xsd:decimal ] ]; fhir:Range.high [ fhir:Quantity.value [ fhir:value "55227979"^^xsd:decimal ] ] ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Sequence/sequence-1-pgx-example> a fhir:Sequence; fhir:Resource.id [ fhir:value "sequence-1-pgx-example"]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>text</b>: </p><p><b>type</b>: DNA</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class=\"grid\"><tr><td>-</td><td><b>Orientation</b></td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>SENSE</td><td>NG-007726.3 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NG-007726.3' = 'NG-007726.3)</span></td><td>55227970</td><td>55227980</td></tr></table></div>" ]; fhir:Sequence.type [ fhir:value "dna"]; fhir:Sequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:Sequence.referenceSeq [ fhir:Sequence.referenceSeq.orientation [ fhir:value "sense" ]; fhir:Sequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ncbi.nlm.nih.gov/nuccore" ]; fhir:Coding.code [ fhir:value "NG-007726.3" ] ] ]; fhir:Sequence.referenceSeq.windowStart [ fhir:value "55227970"^^xsd:integer ]; fhir:Sequence.referenceSeq.windowEnd [ fhir:value "55227980"^^xsd:integer ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Sequence/sequence-2-pgx-example> a fhir:Sequence; fhir:Resource.id [ fhir:value "sequence-2-pgx-example"]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>text</b>: </p><p><b>type</b>: DNA</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class=\"grid\"><tr><td>-</td><td><b>Orientation</b></td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td>SENSE</td><td>NG-007726.3 <span style=\"background: LightGoldenRodYellow\">(Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NG-007726.3' = 'NG-007726.3)</span></td><td>55227970</td><td>55227980</td></tr></table></div>" ]; fhir:Sequence.type [ fhir:value "dna"]; fhir:Sequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:Sequence.referenceSeq [ fhir:Sequence.referenceSeq.orientation [ fhir:value "sense" ]; fhir:Sequence.referenceSeq.referenceSeqId [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.ncbi.nlm.nih.gov/nuccore" ]; fhir:Coding.code [ fhir:value "NG-007726.3" ] ] ]; fhir:Sequence.referenceSeq.windowStart [ fhir:value "55227970"^^xsd:integer ]; fhir:Sequence.referenceSeq.windowEnd [ fhir:value "55227980"^^xsd:integer ] ]. <http://hl7.org/fhir/uv/genomics-reporting/Task/med-usage-impact-task-pgx-example> a fhir:Task; fhir:Resource.id [ fhir:value "med-usage-impact-task-pgx-example"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/task-med-chg"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/task-med-chg> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>text</b>: </p><p><b>status</b>: REQUESTED</p><p><b>intent</b>: PROPOSAL</p><p><b>code</b>: Any Increase does Recommendation Text from the provider <span style=\"background: LightGoldenRodYellow\">(Details : {LOINC code 'LA26423-6' = 'LA26423-6', given as 'Increase dose'})</span></p><p><b>description</b>: Any Increase does Recommendation Text from the provider</p><p><b>focus</b>: <a href=\"#medicationstatement_current-med-example\">Generated Summary: UNKNOWN; <span title=\"Codes: {http://www.nlm.nih.gov/research/umls/rxnorm 103}\">6-mercaptopurine</span></a></p><p><b>for</b>: <a href=\"#patient_patient\">This would contain patient identifiers, demographics, etc.Generated Summary: </a></p><p><b>reasonReference</b>: <a href=\"#observation_med-impact-pgx-example\">Generated Summary: <span title=\"Codes: {http://hl7.org/fhir/observation-category laboratory}\">Laboratory</span>; <span title=\"Codes: {http://loinc.org 53040-2}\">Genetic variation's effect on drug metabolism</span>; effective: 01/01/2018; issued: 06/03/2018 12:00:00 AM; <span title=\"Codes: {http://loinc.org LA25390-8}\">Rapid metabolizer</span></a></p></div>" ]; fhir:Task.status [ fhir:value "requested"]; fhir:Task.intent [ fhir:value "proposal"]; fhir:Task.code [ fhir:CodeableConcept.coding [ fhir:index 0; a loinc:LA26423-6; fhir:Coding.system [ fhir:value "http://loinc.org" ]; fhir:Coding.code [ fhir:value "LA26423-6" ]; fhir:Coding.display [ fhir:value "Increase dose" ] ]; fhir:CodeableConcept.text [ fhir:value "Any Increase does Recommendation Text from the provider" ] ]; fhir:Task.description [ fhir:value "Any Increase does Recommendation Text from the provider"]; fhir:Task.focus [ fhir:Reference.reference [ fhir:value "MedicationStatement/current-med-example" ] ]; fhir:Task.for [ fhir:Reference.reference [ fhir:value "Patient/patient" ] ]; fhir:Task.reasonReference [ fhir:Reference.reference [ fhir:value "Observation/med-impact-pgx-example" ] ]. <http://hl7.org/fhir/uv/genomics-reporting/MedicationStatement/current-med-example> a fhir:MedicationStatement; fhir:Resource.id [ fhir:value "current-med-example"]; fhir:Resource.meta [ fhir:Meta.profile [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medicationstatement"; fhir:index 0; fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/medicationstatement> ] ]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>text</b>: </p><p><b>status</b>: UNKNOWN</p><p><b>medication</b>: 6-mercaptopurine <span style=\"background: LightGoldenRodYellow\">(Details : {RxNorm code '103' = 'mercaptopurine', given as '6-mercaptopurine'})</span></p><p><b>subject</b>: <a href=\"#patient_patient\">This would contain patient identifiers, demographics, etc.Generated Summary: </a></p></div>" ]; fhir:MedicationStatement.status [ fhir:value "unknown"]; fhir:MedicationStatement.medicationCodeableConcept [ fhir:CodeableConcept.coding [ fhir:index 0; fhir:Coding.system [ fhir:value "http://www.nlm.nih.gov/research/umls/rxnorm" ]; fhir:Coding.code [ fhir:value "103" ]; fhir:Coding.display [ fhir:value "6-mercaptopurine" ] ] ]; fhir:MedicationStatement.subject [ fhir:Reference.reference [ fhir:value "Patient/patient" ] ]. # - ontology header ------------------------------------------------------------ a owl:Ontology; owl:imports fhir:fhir.ttl.
© 2017+ HL7 International Clinical Genomics Work Group. Based on FHIR version (3.3.0-13671). IG generated on Wed, Apr 4, 2018 06:23+1000.
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