Extensions for Using Data Elements from FHIR R5 in FHIR R4
0.1.0 - STU International flag

Extensions for Using Data Elements from FHIR R5 in FHIR R4 - Downloaded Version null See the Directory of published versions

Extension: ExtensionGenomicStudy_Analysis

Official URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis Version: 0.1.0
Standards status: Trial-use Maturity Level: 0 Computable Name: ExtensionGenomicStudy_Analysis

R5: GenomicStudy.analysis (new:BackboneElement)

This extension is part of the cross-version definitions generated to enable use of the element GenomicStudy.analysis as defined in FHIR R5 in FHIR R4.

The source element is defined as: GenomicStudy.analysis 0..* BackboneElement

Across FHIR versions, the element set has been mapped as:

  • R5 GenomicStudy.analysis 0..* BackboneElement

Following are the generation technical comments: Element GenomicStudy.analysis is not mapped to FHIR R4, since FHIR R5 GenomicStudy is not mapped. Element GenomicStudy.analysis has no mapping targets in FHIR R4. Typically, this is because the element has been added (is a new element).

Context of Use

    This extension may be used on the following element(s)

    This extension is allowed for use with FHIR versions R4 to R4 .

Usage info

Usages:

You can also check for usages in the FHIR IG Statistics

Formal Views of Extension Content

Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension(4.0.1) R5: Genomic Analysis Event (new)
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:identifier 0..* Extension R5: Identifiers for the analysis event (new)
..... url 1..1 uri "identifier"
..... value[x] 0..1 Identifier Identifiers for the analysis event
.... extension:methodType 0..* Extension R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new)
..... url 1..1 uri "methodType"
..... value[x] 0..1 CodeableConcept Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI)
Binding: R5GenomicstudyMethodtypeForR4 (0.1.0) (example): The method type of the GenomicStudy analysis.
.... extension:changeType 0..* Extension R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new)
..... url 1..1 uri "changeType"
..... value[x] 0..1 CodeableConcept Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change)
Binding: R5GenomicstudyChangetypeForR4 (0.1.0) (example): The change type relevant to GenomicStudy analysis.
.... extension:genomeBuild 0..1 Extension R5: Genome build that is used in this analysis (new)
..... url 1..1 uri "genomeBuild"
..... value[x] 0..1 CodeableConcept Genome build that is used in this analysis
.... extension:instantiatesCanonical 0..1 Extension R5: The defined protocol that describes the analysis (new)
..... url 1..1 uri "instantiatesCanonical"
..... value[x] 0..1 canonical(Cross-version Profile for R5.PlanDefinition for use in FHIR R4(0.1.0) | PlanDefinition | Cross-version Profile for R5.ActivityDefinition for use in FHIR R4(0.1.0) | ActivityDefinition) The defined protocol that describes the analysis
.... extension:instantiatesUri 0..1 Extension R5: The URL pointing to an externally maintained protocol that describes the analysis (new)
..... url 1..1 uri "instantiatesUri"
..... value[x] 0..1 uri The URL pointing to an externally maintained protocol that describes the analysis
.... extension:title 0..1 Extension R5: Name of the analysis event (human friendly) (new)
..... url 1..1 uri "title"
..... value[x] 0..1 string Name of the analysis event (human friendly)
.... extension:focus 0..* Extension R5: What the genomic analysis is about, when it is not about the subject of record (new)
..... url 1..1 uri "focus"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Resource for use in FHIR R4(0.1.0) | Resource) What the genomic analysis is about, when it is not about the subject of record
.... extension:specimen 0..* Extension R5: The specimen used in the analysis event (new)
..... url 1..1 uri "specimen"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Specimen for use in FHIR R4(0.1.0) | Specimen) The specimen used in the analysis event
.... extension:date 0..1 Extension R5: The date of the analysis event (new)
..... url 1..1 uri "date"
..... value[x] 0..1 dateTime The date of the analysis event
.... extension:note 0..* Extension R5: Any notes capture with the analysis event (new)
..... url 1..1 uri "note"
..... value[x] 0..1 Annotation Any notes capture with the analysis event
.... extension:protocolPerformed 0..1 Extension R5: The protocol that was performed for the analysis event (new)
..... url 1..1 uri "protocolPerformed"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Procedure for use in FHIR R4(0.1.0) | Procedure | Cross-version Profile for R5.Task for use in FHIR R4(0.1.0) | Task) The protocol that was performed for the analysis event
.... extension:regionsStudied 0..* Extension R5: The genomic regions to be studied in the analysis (BED file) (new)
..... url 1..1 uri "regionsStudied"
..... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR R4(0.1.0) | Observation) The genomic regions to be studied in the analysis (BED file)
.... extension:regionsCalled 0..* Extension R5: Genomic regions actually called in the analysis event (BED file) (new)
..... url 1..1 uri "regionsCalled"
..... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR R4(0.1.0) | Observation) Genomic regions actually called in the analysis event (BED file)
.... extension:input 0..* Extension R5: Inputs for the analysis event (new)
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:file 0..1 Extension R5: File containing input data (new)
....... url 1..1 uri "file"
....... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media) File containing input data
...... extension:type 0..1 Extension R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new)
....... url 1..1 uri "type"
....... value[x] 0..1 CodeableConcept Type of input data (e.g., BAM, CRAM, or FASTA)
Binding: R5GenomicstudyDataformatForR4 (0.1.0) (example): The data format of the data file.
...... extension:generatedBy 0..1 Extension R5: The analysis event or other GenomicStudy that generated this input file (new)
....... url 1..1 uri "generatedBy"
....... value[x] 0..1 The analysis event or other GenomicStudy that generated this input file
........ valueIdentifier Identifier
........ valueReference Reference(Cross-version Profile for R5.GenomicStudy for use in FHIR R4(0.1.0) | Basic)
..... url 1..1 uri "input"
..... value[x] 0..0 Value of extension
.... extension:output 0..* Extension R5: Outputs for the analysis event (new)
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:file 0..1 Extension R5: File containing output data (new)
....... url 1..1 uri "file"
....... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media) File containing output data
...... extension:type 0..1 Extension R5: Type of output data (e.g., VCF, MAF, or BAM) (new)
....... url 1..1 uri "type"
....... value[x] 0..1 CodeableConcept Type of output data (e.g., VCF, MAF, or BAM)
Binding: R5GenomicstudyDataformatForR4 (0.1.0) (example): The data format of the data file.
..... url 1..1 uri "output"
..... value[x] 0..0 Value of extension
.... extension:performer 0..* Extension R5: Performer for the analysis event (new)
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:actor 0..1 Extension R5: The organization, healthcare professional, or others who participated in performing this analysis (new)
....... url 1..1 uri "actor"
....... value[x] 0..1 Reference(Cross-version Profile for R5.Practitioner for use in FHIR R4(0.1.0) | Practitioner | Cross-version Profile for R5.PractitionerRole for use in FHIR R4(0.1.0) | PractitionerRole | Cross-version Profile for R5.Organization for use in FHIR R4(0.1.0) | Organization | Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) The organization, healthcare professional, or others who participated in performing this analysis
...... extension:role 0..1 Extension R5: Role of the actor for this analysis (new)
....... url 1..1 uri "role"
....... value[x] 0..1 CodeableConcept Role of the actor for this analysis
..... url 1..1 uri "performer"
..... value[x] 0..0 Value of extension
.... extension:device 0..* Extension R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new)
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:device 0..1 Extension R5: Device used for the analysis (new)
....... url 1..1 uri "device"
....... value[x] 0..1 Reference(Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) Device used for the analysis
...... extension:function 0..1 Extension R5: Specific function for the device used for the analysis (new)
....... url 1..1 uri "function"
....... value[x] 0..1 CodeableConcept Specific function for the device used for the analysis
..... url 1..1 uri "device"
..... value[x] 0..0 Value of extension
... url 1..1 uri "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis"
... value[x] 0..0 Value of extension

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension(4.0.1) R5: Genomic Analysis Event (new)
Constraints: ext-1
... id 0..1 string Unique id for inter-element referencing
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
.... extension:identifier 0..* Extension R5: Identifiers for the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "identifier"
..... value[x] 0..1 Identifier Identifiers for the analysis event
.... extension:methodType 0..* Extension R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "methodType"
..... value[x] 0..1 CodeableConcept Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI)
Binding: R5GenomicstudyMethodtypeForR4 (0.1.0) (example): The method type of the GenomicStudy analysis.
.... extension:changeType 0..* Extension R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "changeType"
..... value[x] 0..1 CodeableConcept Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change)
Binding: R5GenomicstudyChangetypeForR4 (0.1.0) (example): The change type relevant to GenomicStudy analysis.
.... extension:genomeBuild 0..1 Extension R5: Genome build that is used in this analysis (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "genomeBuild"
..... value[x] 0..1 CodeableConcept Genome build that is used in this analysis
.... extension:instantiatesCanonical 0..1 Extension R5: The defined protocol that describes the analysis (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "instantiatesCanonical"
..... value[x] 0..1 canonical(Cross-version Profile for R5.PlanDefinition for use in FHIR R4(0.1.0) | PlanDefinition | Cross-version Profile for R5.ActivityDefinition for use in FHIR R4(0.1.0) | ActivityDefinition) The defined protocol that describes the analysis
.... extension:instantiatesUri 0..1 Extension R5: The URL pointing to an externally maintained protocol that describes the analysis (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "instantiatesUri"
..... value[x] 0..1 uri The URL pointing to an externally maintained protocol that describes the analysis
.... extension:title 0..1 Extension R5: Name of the analysis event (human friendly) (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "title"
..... value[x] 0..1 string Name of the analysis event (human friendly)
.... extension:focus 0..* Extension R5: What the genomic analysis is about, when it is not about the subject of record (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "focus"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Resource for use in FHIR R4(0.1.0) | Resource) What the genomic analysis is about, when it is not about the subject of record
.... extension:specimen 0..* Extension R5: The specimen used in the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "specimen"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Specimen for use in FHIR R4(0.1.0) | Specimen) The specimen used in the analysis event
.... extension:date 0..1 Extension R5: The date of the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "date"
..... value[x] 0..1 dateTime The date of the analysis event
.... extension:note 0..* Extension R5: Any notes capture with the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "note"
..... value[x] 0..1 Annotation Any notes capture with the analysis event
.... extension:protocolPerformed 0..1 Extension R5: The protocol that was performed for the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "protocolPerformed"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Procedure for use in FHIR R4(0.1.0) | Procedure | Cross-version Profile for R5.Task for use in FHIR R4(0.1.0) | Task) The protocol that was performed for the analysis event
.... extension:regionsStudied 0..* Extension R5: The genomic regions to be studied in the analysis (BED file) (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "regionsStudied"
..... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR R4(0.1.0) | Observation) The genomic regions to be studied in the analysis (BED file)
.... extension:regionsCalled 0..* Extension R5: Genomic regions actually called in the analysis event (BED file) (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "regionsCalled"
..... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR R4(0.1.0) | Observation) Genomic regions actually called in the analysis event (BED file)
.... extension:input 0..* Extension R5: Inputs for the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:file 0..1 Extension R5: File containing input data (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "file"
....... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media) File containing input data
...... extension:type 0..1 Extension R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "type"
....... value[x] 0..1 CodeableConcept Type of input data (e.g., BAM, CRAM, or FASTA)
Binding: R5GenomicstudyDataformatForR4 (0.1.0) (example): The data format of the data file.
...... extension:generatedBy 0..1 Extension R5: The analysis event or other GenomicStudy that generated this input file (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "generatedBy"
....... value[x] 0..1 The analysis event or other GenomicStudy that generated this input file
........ valueIdentifier Identifier
........ valueReference Reference(Cross-version Profile for R5.GenomicStudy for use in FHIR R4(0.1.0) | Basic)
..... url 1..1 uri "input"
.... extension:output 0..* Extension R5: Outputs for the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:file 0..1 Extension R5: File containing output data (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "file"
....... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media) File containing output data
...... extension:type 0..1 Extension R5: Type of output data (e.g., VCF, MAF, or BAM) (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "type"
....... value[x] 0..1 CodeableConcept Type of output data (e.g., VCF, MAF, or BAM)
Binding: R5GenomicstudyDataformatForR4 (0.1.0) (example): The data format of the data file.
..... url 1..1 uri "output"
.... extension:performer 0..* Extension R5: Performer for the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:actor 0..1 Extension R5: The organization, healthcare professional, or others who participated in performing this analysis (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "actor"
....... value[x] 0..1 Reference(Cross-version Profile for R5.Practitioner for use in FHIR R4(0.1.0) | Practitioner | Cross-version Profile for R5.PractitionerRole for use in FHIR R4(0.1.0) | PractitionerRole | Cross-version Profile for R5.Organization for use in FHIR R4(0.1.0) | Organization | Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) The organization, healthcare professional, or others who participated in performing this analysis
...... extension:role 0..1 Extension R5: Role of the actor for this analysis (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "role"
....... value[x] 0..1 CodeableConcept Role of the actor for this analysis
..... url 1..1 uri "performer"
.... extension:device 0..* Extension R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:device 0..1 Extension R5: Device used for the analysis (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "device"
....... value[x] 0..1 Reference(Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) Device used for the analysis
...... extension:function 0..1 Extension R5: Specific function for the device used for the analysis (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "function"
....... value[x] 0..1 CodeableConcept Specific function for the device used for the analysis
..... url 1..1 uri "device"
... url 1..1 uri "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis"

doco Documentation for this format

This structure is derived from Extension

Summary

Complex Extension: R5: GenomicStudy.analysis (new:BackboneElement)

  • identifier: Identifier: R5: GenomicStudy.analysis.identifier (new:Identifier)
  • methodType: CodeableConcept: R5: GenomicStudy.analysis.methodType (new:CodeableConcept)
  • changeType: CodeableConcept: R5: GenomicStudy.analysis.changeType (new:CodeableConcept)
  • genomeBuild: CodeableConcept: R5: GenomicStudy.analysis.genomeBuild (new:CodeableConcept)
  • instantiatesCanonical: canonical: R5: GenomicStudy.analysis.instantiatesCanonical (new:canonical(PlanDefinition,ActivityDefinition))
  • instantiatesUri: uri: R5: GenomicStudy.analysis.instantiatesUri (new:uri)
  • title: string: R5: GenomicStudy.analysis.title (new:string)
  • focus: Reference: R5: GenomicStudy.analysis.focus (new:Reference(Resource))
  • specimen: Reference: R5: GenomicStudy.analysis.specimen (new:Reference(Specimen))
  • date: dateTime: R5: GenomicStudy.analysis.date (new:dateTime)
  • note: Annotation: R5: GenomicStudy.analysis.note (new:Annotation)
  • protocolPerformed: Reference: R5: GenomicStudy.analysis.protocolPerformed (new:Reference(Procedure,Task))
  • regionsStudied: Reference: R5: GenomicStudy.analysis.regionsStudied (new:Reference(DocumentReference,Observation))
  • regionsCalled: Reference: R5: GenomicStudy.analysis.regionsCalled (new:Reference(DocumentReference,Observation))
  • file: Reference: R5: GenomicStudy.analysis.input.file (new:Reference(DocumentReference))
  • type: CodeableConcept: R5: GenomicStudy.analysis.input.type (new:CodeableConcept)
  • generatedBy: Identifier, Reference: R5: GenomicStudy.analysis.input.generatedBy[x] (new:Identifier, Reference(GenomicStudy))
  • file: Reference: R5: GenomicStudy.analysis.output.file (new:Reference(DocumentReference))
  • type: CodeableConcept: R5: GenomicStudy.analysis.output.type (new:CodeableConcept)
  • actor: Reference: R5: GenomicStudy.analysis.performer.actor (new:Reference(Practitioner,PractitionerRole,Organization,Device))
  • role: CodeableConcept: R5: GenomicStudy.analysis.performer.role (new:CodeableConcept)
  • device: Reference: R5: GenomicStudy.analysis.device.device (new:Reference(Device))
  • function: CodeableConcept: R5: GenomicStudy.analysis.device.function (new:CodeableConcept)

Maturity: 0

Differential View

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension(4.0.1) R5: Genomic Analysis Event (new)
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:identifier 0..* Extension R5: Identifiers for the analysis event (new)
..... url 1..1 uri "identifier"
..... value[x] 0..1 Identifier Identifiers for the analysis event
.... extension:methodType 0..* Extension R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new)
..... url 1..1 uri "methodType"
..... value[x] 0..1 CodeableConcept Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI)
Binding: R5GenomicstudyMethodtypeForR4 (0.1.0) (example): The method type of the GenomicStudy analysis.
.... extension:changeType 0..* Extension R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new)
..... url 1..1 uri "changeType"
..... value[x] 0..1 CodeableConcept Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change)
Binding: R5GenomicstudyChangetypeForR4 (0.1.0) (example): The change type relevant to GenomicStudy analysis.
.... extension:genomeBuild 0..1 Extension R5: Genome build that is used in this analysis (new)
..... url 1..1 uri "genomeBuild"
..... value[x] 0..1 CodeableConcept Genome build that is used in this analysis
.... extension:instantiatesCanonical 0..1 Extension R5: The defined protocol that describes the analysis (new)
..... url 1..1 uri "instantiatesCanonical"
..... value[x] 0..1 canonical(Cross-version Profile for R5.PlanDefinition for use in FHIR R4(0.1.0) | PlanDefinition | Cross-version Profile for R5.ActivityDefinition for use in FHIR R4(0.1.0) | ActivityDefinition) The defined protocol that describes the analysis
.... extension:instantiatesUri 0..1 Extension R5: The URL pointing to an externally maintained protocol that describes the analysis (new)
..... url 1..1 uri "instantiatesUri"
..... value[x] 0..1 uri The URL pointing to an externally maintained protocol that describes the analysis
.... extension:title 0..1 Extension R5: Name of the analysis event (human friendly) (new)
..... url 1..1 uri "title"
..... value[x] 0..1 string Name of the analysis event (human friendly)
.... extension:focus 0..* Extension R5: What the genomic analysis is about, when it is not about the subject of record (new)
..... url 1..1 uri "focus"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Resource for use in FHIR R4(0.1.0) | Resource) What the genomic analysis is about, when it is not about the subject of record
.... extension:specimen 0..* Extension R5: The specimen used in the analysis event (new)
..... url 1..1 uri "specimen"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Specimen for use in FHIR R4(0.1.0) | Specimen) The specimen used in the analysis event
.... extension:date 0..1 Extension R5: The date of the analysis event (new)
..... url 1..1 uri "date"
..... value[x] 0..1 dateTime The date of the analysis event
.... extension:note 0..* Extension R5: Any notes capture with the analysis event (new)
..... url 1..1 uri "note"
..... value[x] 0..1 Annotation Any notes capture with the analysis event
.... extension:protocolPerformed 0..1 Extension R5: The protocol that was performed for the analysis event (new)
..... url 1..1 uri "protocolPerformed"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Procedure for use in FHIR R4(0.1.0) | Procedure | Cross-version Profile for R5.Task for use in FHIR R4(0.1.0) | Task) The protocol that was performed for the analysis event
.... extension:regionsStudied 0..* Extension R5: The genomic regions to be studied in the analysis (BED file) (new)
..... url 1..1 uri "regionsStudied"
..... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR R4(0.1.0) | Observation) The genomic regions to be studied in the analysis (BED file)
.... extension:regionsCalled 0..* Extension R5: Genomic regions actually called in the analysis event (BED file) (new)
..... url 1..1 uri "regionsCalled"
..... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR R4(0.1.0) | Observation) Genomic regions actually called in the analysis event (BED file)
.... extension:input 0..* Extension R5: Inputs for the analysis event (new)
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:file 0..1 Extension R5: File containing input data (new)
....... url 1..1 uri "file"
....... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media) File containing input data
...... extension:type 0..1 Extension R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new)
....... url 1..1 uri "type"
....... value[x] 0..1 CodeableConcept Type of input data (e.g., BAM, CRAM, or FASTA)
Binding: R5GenomicstudyDataformatForR4 (0.1.0) (example): The data format of the data file.
...... extension:generatedBy 0..1 Extension R5: The analysis event or other GenomicStudy that generated this input file (new)
....... url 1..1 uri "generatedBy"
....... value[x] 0..1 The analysis event or other GenomicStudy that generated this input file
........ valueIdentifier Identifier
........ valueReference Reference(Cross-version Profile for R5.GenomicStudy for use in FHIR R4(0.1.0) | Basic)
..... url 1..1 uri "input"
..... value[x] 0..0 Value of extension
.... extension:output 0..* Extension R5: Outputs for the analysis event (new)
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:file 0..1 Extension R5: File containing output data (new)
....... url 1..1 uri "file"
....... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media) File containing output data
...... extension:type 0..1 Extension R5: Type of output data (e.g., VCF, MAF, or BAM) (new)
....... url 1..1 uri "type"
....... value[x] 0..1 CodeableConcept Type of output data (e.g., VCF, MAF, or BAM)
Binding: R5GenomicstudyDataformatForR4 (0.1.0) (example): The data format of the data file.
..... url 1..1 uri "output"
..... value[x] 0..0 Value of extension
.... extension:performer 0..* Extension R5: Performer for the analysis event (new)
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:actor 0..1 Extension R5: The organization, healthcare professional, or others who participated in performing this analysis (new)
....... url 1..1 uri "actor"
....... value[x] 0..1 Reference(Cross-version Profile for R5.Practitioner for use in FHIR R4(0.1.0) | Practitioner | Cross-version Profile for R5.PractitionerRole for use in FHIR R4(0.1.0) | PractitionerRole | Cross-version Profile for R5.Organization for use in FHIR R4(0.1.0) | Organization | Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) The organization, healthcare professional, or others who participated in performing this analysis
...... extension:role 0..1 Extension R5: Role of the actor for this analysis (new)
....... url 1..1 uri "role"
....... value[x] 0..1 CodeableConcept Role of the actor for this analysis
..... url 1..1 uri "performer"
..... value[x] 0..0 Value of extension
.... extension:device 0..* Extension R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new)
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:device 0..1 Extension R5: Device used for the analysis (new)
....... url 1..1 uri "device"
....... value[x] 0..1 Reference(Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) Device used for the analysis
...... extension:function 0..1 Extension R5: Specific function for the device used for the analysis (new)
....... url 1..1 uri "function"
....... value[x] 0..1 CodeableConcept Specific function for the device used for the analysis
..... url 1..1 uri "device"
..... value[x] 0..0 Value of extension
... url 1..1 uri "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis"
... value[x] 0..0 Value of extension

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Extension 0..* Extension(4.0.1) R5: Genomic Analysis Event (new)
Constraints: ext-1
... id 0..1 string Unique id for inter-element referencing
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
.... extension:identifier 0..* Extension R5: Identifiers for the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "identifier"
..... value[x] 0..1 Identifier Identifiers for the analysis event
.... extension:methodType 0..* Extension R5: Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI) (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "methodType"
..... value[x] 0..1 CodeableConcept Type of the methods used in the analysis (e.g., FISH, Karyotyping, MSI)
Binding: R5GenomicstudyMethodtypeForR4 (0.1.0) (example): The method type of the GenomicStudy analysis.
.... extension:changeType 0..* Extension R5: Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change) (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "changeType"
..... value[x] 0..1 CodeableConcept Type of the genomic changes studied in the analysis (e.g., DNA, RNA, or AA change)
Binding: R5GenomicstudyChangetypeForR4 (0.1.0) (example): The change type relevant to GenomicStudy analysis.
.... extension:genomeBuild 0..1 Extension R5: Genome build that is used in this analysis (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "genomeBuild"
..... value[x] 0..1 CodeableConcept Genome build that is used in this analysis
.... extension:instantiatesCanonical 0..1 Extension R5: The defined protocol that describes the analysis (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "instantiatesCanonical"
..... value[x] 0..1 canonical(Cross-version Profile for R5.PlanDefinition for use in FHIR R4(0.1.0) | PlanDefinition | Cross-version Profile for R5.ActivityDefinition for use in FHIR R4(0.1.0) | ActivityDefinition) The defined protocol that describes the analysis
.... extension:instantiatesUri 0..1 Extension R5: The URL pointing to an externally maintained protocol that describes the analysis (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "instantiatesUri"
..... value[x] 0..1 uri The URL pointing to an externally maintained protocol that describes the analysis
.... extension:title 0..1 Extension R5: Name of the analysis event (human friendly) (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "title"
..... value[x] 0..1 string Name of the analysis event (human friendly)
.... extension:focus 0..* Extension R5: What the genomic analysis is about, when it is not about the subject of record (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "focus"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Resource for use in FHIR R4(0.1.0) | Resource) What the genomic analysis is about, when it is not about the subject of record
.... extension:specimen 0..* Extension R5: The specimen used in the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "specimen"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Specimen for use in FHIR R4(0.1.0) | Specimen) The specimen used in the analysis event
.... extension:date 0..1 Extension R5: The date of the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "date"
..... value[x] 0..1 dateTime The date of the analysis event
.... extension:note 0..* Extension R5: Any notes capture with the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "note"
..... value[x] 0..1 Annotation Any notes capture with the analysis event
.... extension:protocolPerformed 0..1 Extension R5: The protocol that was performed for the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "protocolPerformed"
..... value[x] 0..1 Reference(Cross-version Profile for R5.Procedure for use in FHIR R4(0.1.0) | Procedure | Cross-version Profile for R5.Task for use in FHIR R4(0.1.0) | Task) The protocol that was performed for the analysis event
.... extension:regionsStudied 0..* Extension R5: The genomic regions to be studied in the analysis (BED file) (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "regionsStudied"
..... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR R4(0.1.0) | Observation) The genomic regions to be studied in the analysis (BED file)
.... extension:regionsCalled 0..* Extension R5: Genomic regions actually called in the analysis event (BED file) (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
..... url 1..1 uri "regionsCalled"
..... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media | Cross-version Profile for R5.Observation for use in FHIR R4(0.1.0) | Observation) Genomic regions actually called in the analysis event (BED file)
.... extension:input 0..* Extension R5: Inputs for the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:file 0..1 Extension R5: File containing input data (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "file"
....... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media) File containing input data
...... extension:type 0..1 Extension R5: Type of input data (e.g., BAM, CRAM, or FASTA) (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "type"
....... value[x] 0..1 CodeableConcept Type of input data (e.g., BAM, CRAM, or FASTA)
Binding: R5GenomicstudyDataformatForR4 (0.1.0) (example): The data format of the data file.
...... extension:generatedBy 0..1 Extension R5: The analysis event or other GenomicStudy that generated this input file (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "generatedBy"
....... value[x] 0..1 The analysis event or other GenomicStudy that generated this input file
........ valueIdentifier Identifier
........ valueReference Reference(Cross-version Profile for R5.GenomicStudy for use in FHIR R4(0.1.0) | Basic)
..... url 1..1 uri "input"
.... extension:output 0..* Extension R5: Outputs for the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:file 0..1 Extension R5: File containing output data (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "file"
....... value[x] 0..1 Reference(Cross-version Profile for R5.DocumentReference for use in FHIR R4(0.1.0) | Media) File containing output data
...... extension:type 0..1 Extension R5: Type of output data (e.g., VCF, MAF, or BAM) (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "type"
....... value[x] 0..1 CodeableConcept Type of output data (e.g., VCF, MAF, or BAM)
Binding: R5GenomicstudyDataformatForR4 (0.1.0) (example): The data format of the data file.
..... url 1..1 uri "output"
.... extension:performer 0..* Extension R5: Performer for the analysis event (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:actor 0..1 Extension R5: The organization, healthcare professional, or others who participated in performing this analysis (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "actor"
....... value[x] 0..1 Reference(Cross-version Profile for R5.Practitioner for use in FHIR R4(0.1.0) | Practitioner | Cross-version Profile for R5.PractitionerRole for use in FHIR R4(0.1.0) | PractitionerRole | Cross-version Profile for R5.Organization for use in FHIR R4(0.1.0) | Organization | Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) The organization, healthcare professional, or others who participated in performing this analysis
...... extension:role 0..1 Extension R5: Role of the actor for this analysis (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "role"
....... value[x] 0..1 CodeableConcept Role of the actor for this analysis
..... url 1..1 uri "performer"
.... extension:device 0..* Extension R5: Devices used for the analysis (e.g., instruments, software), with settings and parameters (new)
Constraints: ext-1
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:device 0..1 Extension R5: Device used for the analysis (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "device"
....... value[x] 0..1 Reference(Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) Device used for the analysis
...... extension:function 0..1 Extension R5: Specific function for the device used for the analysis (new)
Constraints: ext-1
....... id 0..1 string Unique id for inter-element referencing
....... extension 0..* Extension Additional content defined by implementations
Slice: Unordered, Open by value:url
Constraints: ext-1
....... url 1..1 uri "function"
....... value[x] 0..1 CodeableConcept Specific function for the device used for the analysis
..... url 1..1 uri "device"
... url 1..1 uri "http://hl7.org/fhir/5.0/StructureDefinition/extension-GenomicStudy.analysis"

doco Documentation for this format

This structure is derived from Extension

Summary

Complex Extension: R5: GenomicStudy.analysis (new:BackboneElement)

  • identifier: Identifier: R5: GenomicStudy.analysis.identifier (new:Identifier)
  • methodType: CodeableConcept: R5: GenomicStudy.analysis.methodType (new:CodeableConcept)
  • changeType: CodeableConcept: R5: GenomicStudy.analysis.changeType (new:CodeableConcept)
  • genomeBuild: CodeableConcept: R5: GenomicStudy.analysis.genomeBuild (new:CodeableConcept)
  • instantiatesCanonical: canonical: R5: GenomicStudy.analysis.instantiatesCanonical (new:canonical(PlanDefinition,ActivityDefinition))
  • instantiatesUri: uri: R5: GenomicStudy.analysis.instantiatesUri (new:uri)
  • title: string: R5: GenomicStudy.analysis.title (new:string)
  • focus: Reference: R5: GenomicStudy.analysis.focus (new:Reference(Resource))
  • specimen: Reference: R5: GenomicStudy.analysis.specimen (new:Reference(Specimen))
  • date: dateTime: R5: GenomicStudy.analysis.date (new:dateTime)
  • note: Annotation: R5: GenomicStudy.analysis.note (new:Annotation)
  • protocolPerformed: Reference: R5: GenomicStudy.analysis.protocolPerformed (new:Reference(Procedure,Task))
  • regionsStudied: Reference: R5: GenomicStudy.analysis.regionsStudied (new:Reference(DocumentReference,Observation))
  • regionsCalled: Reference: R5: GenomicStudy.analysis.regionsCalled (new:Reference(DocumentReference,Observation))
  • file: Reference: R5: GenomicStudy.analysis.input.file (new:Reference(DocumentReference))
  • type: CodeableConcept: R5: GenomicStudy.analysis.input.type (new:CodeableConcept)
  • generatedBy: Identifier, Reference: R5: GenomicStudy.analysis.input.generatedBy[x] (new:Identifier, Reference(GenomicStudy))
  • file: Reference: R5: GenomicStudy.analysis.output.file (new:Reference(DocumentReference))
  • type: CodeableConcept: R5: GenomicStudy.analysis.output.type (new:CodeableConcept)
  • actor: Reference: R5: GenomicStudy.analysis.performer.actor (new:Reference(Practitioner,PractitionerRole,Organization,Device))
  • role: CodeableConcept: R5: GenomicStudy.analysis.performer.role (new:CodeableConcept)
  • device: Reference: R5: GenomicStudy.analysis.device.device (new:Reference(Device))
  • function: CodeableConcept: R5: GenomicStudy.analysis.device.function (new:CodeableConcept)

Maturity: 0

 

Other representations of profile: CSV, Excel, Schematron

Terminology Bindings

Path Status Usage ValueSet Version Source
Extension.extension:methodType.​value[x] Base example Cross-version ValueSet R5.GenomicStudyMethodType for use in FHIR R4 📍0.1.0 This IG
Extension.extension:changeType.​value[x] Base example Cross-version ValueSet R5.GenomicStudyChangeType for use in FHIR R4 📍0.1.0 This IG
Extension.extension:input.​extension:type.value[x] Base example Cross-version ValueSet R5.GenomicStudyDataFormat for use in FHIR R4 📍0.1.0 This IG
Extension.extension:output.​extension:type.value[x] Base example Cross-version ValueSet R5.GenomicStudyDataFormat for use in FHIR R4 📍0.1.0 This IG

Constraints

Id Grade Path(s) Description Expression
ele-1 error Extension, Extension.extension, Extension.extension:identifier, Extension.extension:identifier.extension, Extension.extension:identifier.value[x], Extension.extension:methodType, Extension.extension:methodType.extension, Extension.extension:methodType.value[x], Extension.extension:changeType, Extension.extension:changeType.extension, Extension.extension:changeType.value[x], Extension.extension:genomeBuild, Extension.extension:genomeBuild.extension, Extension.extension:genomeBuild.value[x], Extension.extension:instantiatesCanonical, Extension.extension:instantiatesCanonical.extension, Extension.extension:instantiatesCanonical.value[x], Extension.extension:instantiatesUri, Extension.extension:instantiatesUri.extension, Extension.extension:instantiatesUri.value[x], Extension.extension:title, Extension.extension:title.extension, Extension.extension:title.value[x], Extension.extension:focus, Extension.extension:focus.extension, Extension.extension:focus.value[x], Extension.extension:specimen, Extension.extension:specimen.extension, Extension.extension:specimen.value[x], Extension.extension:date, Extension.extension:date.extension, Extension.extension:date.value[x], Extension.extension:note, Extension.extension:note.extension, Extension.extension:note.value[x], Extension.extension:protocolPerformed, Extension.extension:protocolPerformed.extension, Extension.extension:protocolPerformed.value[x], Extension.extension:regionsStudied, Extension.extension:regionsStudied.extension, Extension.extension:regionsStudied.value[x], Extension.extension:regionsCalled, Extension.extension:regionsCalled.extension, Extension.extension:regionsCalled.value[x], Extension.extension:input, Extension.extension:input.extension, Extension.extension:input.extension:file, Extension.extension:input.extension:file.extension, Extension.extension:input.extension:file.value[x], Extension.extension:input.extension:type, Extension.extension:input.extension:type.extension, Extension.extension:input.extension:type.value[x], Extension.extension:input.extension:generatedBy, Extension.extension:input.extension:generatedBy.extension, Extension.extension:input.extension:generatedBy.value[x], Extension.extension:output, Extension.extension:output.extension, Extension.extension:output.extension:file, Extension.extension:output.extension:file.extension, Extension.extension:output.extension:file.value[x], Extension.extension:output.extension:type, Extension.extension:output.extension:type.extension, Extension.extension:output.extension:type.value[x], Extension.extension:performer, Extension.extension:performer.extension, Extension.extension:performer.extension:actor, Extension.extension:performer.extension:actor.extension, Extension.extension:performer.extension:actor.value[x], Extension.extension:performer.extension:role, Extension.extension:performer.extension:role.extension, Extension.extension:performer.extension:role.value[x], Extension.extension:device, Extension.extension:device.extension, Extension.extension:device.extension:device, Extension.extension:device.extension:device.extension, Extension.extension:device.extension:device.value[x], Extension.extension:device.extension:function, Extension.extension:device.extension:function.extension, Extension.extension:device.extension:function.value[x] All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Extension, Extension.extension, Extension.extension:identifier, Extension.extension:identifier.extension, Extension.extension:methodType, Extension.extension:methodType.extension, Extension.extension:changeType, Extension.extension:changeType.extension, Extension.extension:genomeBuild, Extension.extension:genomeBuild.extension, Extension.extension:instantiatesCanonical, Extension.extension:instantiatesCanonical.extension, Extension.extension:instantiatesUri, Extension.extension:instantiatesUri.extension, Extension.extension:title, Extension.extension:title.extension, Extension.extension:focus, Extension.extension:focus.extension, Extension.extension:specimen, Extension.extension:specimen.extension, Extension.extension:date, Extension.extension:date.extension, Extension.extension:note, Extension.extension:note.extension, Extension.extension:protocolPerformed, Extension.extension:protocolPerformed.extension, Extension.extension:regionsStudied, Extension.extension:regionsStudied.extension, Extension.extension:regionsCalled, Extension.extension:regionsCalled.extension, Extension.extension:input, Extension.extension:input.extension, Extension.extension:input.extension:file, Extension.extension:input.extension:file.extension, Extension.extension:input.extension:type, Extension.extension:input.extension:type.extension, Extension.extension:input.extension:generatedBy, Extension.extension:input.extension:generatedBy.extension, Extension.extension:output, Extension.extension:output.extension, Extension.extension:output.extension:file, Extension.extension:output.extension:file.extension, Extension.extension:output.extension:type, Extension.extension:output.extension:type.extension, Extension.extension:performer, Extension.extension:performer.extension, Extension.extension:performer.extension:actor, Extension.extension:performer.extension:actor.extension, Extension.extension:performer.extension:role, Extension.extension:performer.extension:role.extension, Extension.extension:device, Extension.extension:device.extension, Extension.extension:device.extension:device, Extension.extension:device.extension:device.extension, Extension.extension:device.extension:function, Extension.extension:device.extension:function.extension Must have either extensions or value[x], not both extension.exists() != value.exists()