Extensions for Using Data Elements from FHIR R5 in FHIR R4
0.1.0 - STU International flag

Extensions for Using Data Elements from FHIR R5 in FHIR R4 - Downloaded Version null See the Directory of published versions

Resource Profile: Profile_R5_Specimen_R4

Official URL: http://hl7.org/fhir/5.0/StructureDefinition/profile-Specimen Version: 0.1.0
Standards status: Trial-use Maturity Level: 0 Computable Name: Profile_R5_Specimen_R4

This cross-version profile allows R5 Specimen content to be represented via FHIR R4 Specimen resources.

Usages:

You can also check for usages in the FHIR IG Statistics

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen(4.0.1) Sample for analysis
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
.... extension:combined 0..1 code R5: grouped | pooled (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.combined
Binding: R5SpecimenCombinedForR4 (0.1.0) (required): Codes for the combined status of a specimen.
Constraints: ext-1
.... extension:role 0..* CodeableConcept R5: The role the specimen serves (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.role
Binding: R5SpecimenRoleForR4 (0.1.0) (preferred): Codes describing specimen role.
Constraints: ext-1
.... extension:feature 0..* (Complex) R5: The physical feature of a specimen (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
Constraints: ext-1
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
Constraints: ext-1

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error Specimen.implicitRules, Specimen.extension, Specimen.extension:combined, Specimen.extension:role, Specimen.extension:feature, Specimen.modifierExtension, Specimen.status All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Specimen.extension, Specimen.extension:combined, Specimen.extension:role, Specimen.extension:feature, Specimen.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

This structure is derived from Specimen

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen(4.0.1) Sample for analysis
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:combined 0..1 code R5: grouped | pooled (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.combined
Binding: R5SpecimenCombinedForR4 (0.1.0) (required): Codes for the combined status of a specimen.
.... extension:role 0..* CodeableConcept R5: The role the specimen serves (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.role
Binding: R5SpecimenRoleForR4 (0.1.0) (preferred): Codes describing specimen role.
.... extension:feature 0..* (Complex) R5: The physical feature of a specimen (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
... subject
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:subject 0..1 Reference(Resource) R5: Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device
URL: http://hl7.org/fhir/StructureDefinition/alternate-reference
... collection
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:device 0..1 (Complex) R5: Device used to perform collection (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.device
..... extension:procedure 0..1 Reference(Cross-version Profile for R5.Procedure for use in FHIR R4(0.1.0) | Procedure) R5: The procedure that collects the specimen (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.procedure
.... collector
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:collector 0..1 Reference(Resource) R5: collector
URL: http://hl7.org/fhir/StructureDefinition/alternate-reference
.... bodySite
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:bodySite 0..1 Reference(Cross-version Profile for R5.BodyStructure for use in FHIR R4(0.1.0) | BodyStructure) R5: bodySite additional types
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.bodySite
.... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:device 1..1 Reference(Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) R5: Device resource for the container (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device
..... extension:location 0..1 Reference(Cross-version Profile for R5.Location for use in FHIR R4(0.1.0) | Location) R5: Where the container is (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.location

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen(4.0.1) Sample for analysis
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
.... extension:combined 0..1 code R5: grouped | pooled (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.combined
Binding: R5SpecimenCombinedForR4 (0.1.0) (required): Codes for the combined status of a specimen.
Constraints: ext-1
.... extension:role 0..* CodeableConcept R5: The role the specimen serves (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.role
Binding: R5SpecimenRoleForR4 (0.1.0) (preferred): Codes describing specimen role.
Constraints: ext-1
.... extension:feature 0..* (Complex) R5: The physical feature of a specimen (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
Constraints: ext-1
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
Constraints: ext-1
... identifier Σ 0..* Identifier External Identifier
... accessionIdentifier Σ 0..1 Identifier Identifier assigned by the lab
... status ?!Σ 0..1 code available | unavailable | unsatisfactory | entered-in-error
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type Σ 0..1 CodeableConcept Kind of material that forms the specimen
Binding: Hl7VSSpecimenType (3.0.0) (example): The type of the specimen.
... subject Σ 0..1 Reference(Patient | Group | Device | Substance | Location) Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
..... extension:subject 0..1 Reference(Resource) R5: Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device
URL: http://hl7.org/fhir/StructureDefinition/alternate-reference
Constraints: ext-1
.... reference ΣC 0..1 string Literal reference, Relative, internal or absolute URL
.... type Σ 0..1 uri Type the reference refers to (e.g. "Patient")
Binding: ResourceType . (extensible): Aa resource (or, for logical models, the URI of the logical model).
.... identifier Σ 0..1 Identifier Logical reference, when literal reference is not known
.... display Σ 0..1 string Text alternative for the resource
... receivedTime Σ 0..1 dateTime The time when specimen was received for processing
... parent 0..* Reference(Specimen) Specimen from which this specimen originated
... request 0..* Reference(ServiceRequest) Why the specimen was collected
... collection 0..1 BackboneElement Collection details
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
..... extension:device 0..1 (Complex) R5: Device used to perform collection (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.device
Constraints: ext-1
..... extension:procedure 0..1 Reference(Cross-version Profile for R5.Procedure for use in FHIR R4(0.1.0) | Procedure) R5: The procedure that collects the specimen (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.procedure
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... collector Σ 0..1 Reference(Practitioner | PractitionerRole) Who collected the specimen
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:collector 0..1 Reference(Resource) R5: collector
URL: http://hl7.org/fhir/StructureDefinition/alternate-reference
Constraints: ext-1
..... reference ΣC 0..1 string Literal reference, Relative, internal or absolute URL
..... type Σ 0..1 uri Type the reference refers to (e.g. "Patient")
Binding: ResourceType . (extensible): Aa resource (or, for logical models, the URI of the logical model).
..... identifier Σ 0..1 Identifier Logical reference, when literal reference is not known
..... display Σ 0..1 string Text alternative for the resource
.... collected[x] Σ 0..1 Collection time
..... collectedDateTime dateTime
..... collectedPeriod Period
.... duration Σ 0..1 Duration How long it took to collect specimen
.... quantity 0..1 SimpleQuantity(4.0.1) The quantity of specimen collected
.... method 0..1 CodeableConcept Technique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
.... bodySite 0..1 CodeableConcept Anatomical collection site
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:bodySite 0..1 Reference(Cross-version Profile for R5.BodyStructure for use in FHIR R4(0.1.0) | BodyStructure) R5: bodySite additional types
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.bodySite
Constraints: ext-1
..... coding Σ 0..* Coding Code defined by a terminology system
..... text Σ 0..1 string Plain text representation of the concept
.... fastingStatus[x] Σ 0..1 Whether or how long patient abstained from food and/or drink
Binding: Hl7VSRelevantClincialInformation (3.0.0) (extensible): Codes describing the fasting status of the patient.
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
... processing 0..* BackboneElement Processing and processing step details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... description 0..1 string Textual description of procedure
.... procedure 0..1 CodeableConcept Indicates the treatment step applied to the specimen
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
.... additive 0..* Reference(Substance) Material used in the processing step
.... time[x] 0..1 Date and time of specimen processing
..... timeDateTime dateTime
..... timePeriod Period
... container 0..* BackboneElement Direct container of specimen (tube/slide, etc.)
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
..... extension:device 1..1 Reference(Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) R5: Device resource for the container (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device
Constraints: ext-1
..... extension:location 0..1 Reference(Cross-version Profile for R5.Location for use in FHIR R4(0.1.0) | Location) R5: Where the container is (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.location
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... identifier Σ 0..* Identifier Id for the container
.... description 0..1 string Textual description of the container
.... type 0..1 CodeableConcept Kind of container directly associated with specimen
Binding: SpecimenContainerType (example): Type of specimen container.
.... capacity 0..1 SimpleQuantity(4.0.1) Container volume or size
.... specimenQuantity 0..1 SimpleQuantity(4.0.1) Quantity of specimen within container
.... additive[x] 0..1 Additive associated with container
Binding: Hl7VSAdditivePreservative (3.0.0) (example): Substance added to specimen container.
..... additiveCodeableConcept CodeableConcept
..... additiveReference Reference(Substance)
... condition Σ 0..* CodeableConcept State of the specimen
Binding: Hl7VSSpecimenCondition (3.0.0) (extensible): Codes describing the state of the specimen.
... note 0..* Annotation Comments

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.language Base preferred Common Languages . 📍4.0.1 tx.fhir.org
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.
Specimen.type Base example hl7VS-specimenType 📍3.0.0 THO v7.1
Specimen.subject.type Base extensible ResourceType . 📍4.0.1 tx.fhir.org
Specimen.collection.​collector.type Base extensible ResourceType . 📍4.0.1 tx.fhir.org
Specimen.collection.​method Base example FHIR Specimen Collection Method 📍4.0.1 FHIR Std.
Specimen.collection.​bodySite Base example SNOMED CT Body Structures 📍4.0.1 FHIR Std.
Specimen.collection.​fastingStatus[x] Base extensible hl7VS-relevantClincialInformation 📍3.0.0 THO v7.1
Specimen.processing.​procedure Base example Specimen processing procedure 📍4.0.1 FHIR Std.
Specimen.container.type Base example Specimen Container Type 📍4.0.1 FHIR Std.
Specimen.container.additive[x] Base example hl7VS-additivePreservative 📍3.0.0 THO v7.1
Specimen.condition Base extensible hl7VS-specimenCondition 📍3.0.0 THO v7.1

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error Specimen.meta, Specimen.implicitRules, Specimen.language, Specimen.text, Specimen.extension, Specimen.extension:combined, Specimen.extension:role, Specimen.extension:feature, Specimen.modifierExtension, Specimen.identifier, Specimen.accessionIdentifier, Specimen.status, Specimen.type, Specimen.subject, Specimen.subject.extension, Specimen.subject.extension:subject, Specimen.subject.reference, Specimen.subject.type, Specimen.subject.identifier, Specimen.subject.display, Specimen.receivedTime, Specimen.parent, Specimen.request, Specimen.collection, Specimen.collection.extension, Specimen.collection.extension:device, Specimen.collection.extension:procedure, Specimen.collection.modifierExtension, Specimen.collection.collector, Specimen.collection.collector.extension, Specimen.collection.collector.extension:collector, Specimen.collection.collector.reference, Specimen.collection.collector.type, Specimen.collection.collector.identifier, Specimen.collection.collector.display, Specimen.collection.collected[x], Specimen.collection.duration, Specimen.collection.quantity, Specimen.collection.method, Specimen.collection.bodySite, Specimen.collection.bodySite.extension, Specimen.collection.bodySite.extension:bodySite, Specimen.collection.bodySite.coding, Specimen.collection.bodySite.text, Specimen.collection.fastingStatus[x], Specimen.processing, Specimen.processing.extension, Specimen.processing.modifierExtension, Specimen.processing.description, Specimen.processing.procedure, Specimen.processing.additive, Specimen.processing.time[x], Specimen.container, Specimen.container.extension, Specimen.container.extension:device, Specimen.container.extension:location, Specimen.container.modifierExtension, Specimen.container.identifier, Specimen.container.description, Specimen.container.type, Specimen.container.capacity, Specimen.container.specimenQuantity, Specimen.container.additive[x], Specimen.condition, Specimen.note All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Specimen.extension, Specimen.extension:combined, Specimen.extension:role, Specimen.extension:feature, Specimen.modifierExtension, Specimen.subject.extension, Specimen.subject.extension:subject, Specimen.collection.extension, Specimen.collection.extension:device, Specimen.collection.extension:procedure, Specimen.collection.modifierExtension, Specimen.collection.collector.extension, Specimen.collection.collector.extension:collector, Specimen.collection.bodySite.extension, Specimen.collection.bodySite.extension:bodySite, Specimen.processing.extension, Specimen.processing.modifierExtension, Specimen.container.extension, Specimen.container.extension:device, Specimen.container.extension:location, Specimen.container.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

Key Elements View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen(4.0.1) Sample for analysis
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
.... extension:combined 0..1 code R5: grouped | pooled (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.combined
Binding: R5SpecimenCombinedForR4 (0.1.0) (required): Codes for the combined status of a specimen.
Constraints: ext-1
.... extension:role 0..* CodeableConcept R5: The role the specimen serves (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.role
Binding: R5SpecimenRoleForR4 (0.1.0) (preferred): Codes describing specimen role.
Constraints: ext-1
.... extension:feature 0..* (Complex) R5: The physical feature of a specimen (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
Constraints: ext-1
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
Constraints: ext-1

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error Specimen.implicitRules, Specimen.extension, Specimen.extension:combined, Specimen.extension:role, Specimen.extension:feature, Specimen.modifierExtension, Specimen.status All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Specimen.extension, Specimen.extension:combined, Specimen.extension:role, Specimen.extension:feature, Specimen.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

Differential View

This structure is derived from Specimen

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen(4.0.1) Sample for analysis
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:combined 0..1 code R5: grouped | pooled (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.combined
Binding: R5SpecimenCombinedForR4 (0.1.0) (required): Codes for the combined status of a specimen.
.... extension:role 0..* CodeableConcept R5: The role the specimen serves (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.role
Binding: R5SpecimenRoleForR4 (0.1.0) (preferred): Codes describing specimen role.
.... extension:feature 0..* (Complex) R5: The physical feature of a specimen (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
... subject
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:subject 0..1 Reference(Resource) R5: Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device
URL: http://hl7.org/fhir/StructureDefinition/alternate-reference
... collection
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:device 0..1 (Complex) R5: Device used to perform collection (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.device
..... extension:procedure 0..1 Reference(Cross-version Profile for R5.Procedure for use in FHIR R4(0.1.0) | Procedure) R5: The procedure that collects the specimen (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.procedure
.... collector
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:collector 0..1 Reference(Resource) R5: collector
URL: http://hl7.org/fhir/StructureDefinition/alternate-reference
.... bodySite
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
...... extension:bodySite 0..1 Reference(Cross-version Profile for R5.BodyStructure for use in FHIR R4(0.1.0) | BodyStructure) R5: bodySite additional types
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.bodySite
.... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
..... extension:device 1..1 Reference(Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) R5: Device resource for the container (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device
..... extension:location 0..1 Reference(Cross-version Profile for R5.Location for use in FHIR R4(0.1.0) | Location) R5: Where the container is (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.location

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Specimen 0..* Specimen(4.0.1) Sample for analysis
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
.... extension:combined 0..1 code R5: grouped | pooled (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.combined
Binding: R5SpecimenCombinedForR4 (0.1.0) (required): Codes for the combined status of a specimen.
Constraints: ext-1
.... extension:role 0..* CodeableConcept R5: The role the specimen serves (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.role
Binding: R5SpecimenRoleForR4 (0.1.0) (preferred): Codes describing specimen role.
Constraints: ext-1
.... extension:feature 0..* (Complex) R5: The physical feature of a specimen (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.feature
Constraints: ext-1
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
Constraints: ext-1
... identifier Σ 0..* Identifier External Identifier
... accessionIdentifier Σ 0..1 Identifier Identifier assigned by the lab
... status ?!Σ 0..1 code available | unavailable | unsatisfactory | entered-in-error
Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
... type Σ 0..1 CodeableConcept Kind of material that forms the specimen
Binding: Hl7VSSpecimenType (3.0.0) (example): The type of the specimen.
... subject Σ 0..1 Reference(Patient | Group | Device | Substance | Location) Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
..... extension:subject 0..1 Reference(Resource) R5: Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance, a biologically-derived product, or a device
URL: http://hl7.org/fhir/StructureDefinition/alternate-reference
Constraints: ext-1
.... reference ΣC 0..1 string Literal reference, Relative, internal or absolute URL
.... type Σ 0..1 uri Type the reference refers to (e.g. "Patient")
Binding: ResourceType . (extensible): Aa resource (or, for logical models, the URI of the logical model).
.... identifier Σ 0..1 Identifier Logical reference, when literal reference is not known
.... display Σ 0..1 string Text alternative for the resource
... receivedTime Σ 0..1 dateTime The time when specimen was received for processing
... parent 0..* Reference(Specimen) Specimen from which this specimen originated
... request 0..* Reference(ServiceRequest) Why the specimen was collected
... collection 0..1 BackboneElement Collection details
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
..... extension:device 0..1 (Complex) R5: Device used to perform collection (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.device
Constraints: ext-1
..... extension:procedure 0..1 Reference(Cross-version Profile for R5.Procedure for use in FHIR R4(0.1.0) | Procedure) R5: The procedure that collects the specimen (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.procedure
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... collector Σ 0..1 Reference(Practitioner | PractitionerRole) Who collected the specimen
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:collector 0..1 Reference(Resource) R5: collector
URL: http://hl7.org/fhir/StructureDefinition/alternate-reference
Constraints: ext-1
..... reference ΣC 0..1 string Literal reference, Relative, internal or absolute URL
..... type Σ 0..1 uri Type the reference refers to (e.g. "Patient")
Binding: ResourceType . (extensible): Aa resource (or, for logical models, the URI of the logical model).
..... identifier Σ 0..1 Identifier Logical reference, when literal reference is not known
..... display Σ 0..1 string Text alternative for the resource
.... collected[x] Σ 0..1 Collection time
..... collectedDateTime dateTime
..... collectedPeriod Period
.... duration Σ 0..1 Duration How long it took to collect specimen
.... quantity 0..1 SimpleQuantity(4.0.1) The quantity of specimen collected
.... method 0..1 CodeableConcept Technique used to perform collection
Binding: FHIRSpecimenCollectionMethod (example): The technique that is used to perform the procedure.
.... bodySite 0..1 CodeableConcept Anatomical collection site
Binding: SNOMEDCTBodyStructures (example): Codes describing anatomical locations. May include laterality.
..... id 0..1 string Unique id for inter-element referencing
..... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
...... extension:bodySite 0..1 Reference(Cross-version Profile for R5.BodyStructure for use in FHIR R4(0.1.0) | BodyStructure) R5: bodySite additional types
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.collection.bodySite
Constraints: ext-1
..... coding Σ 0..* Coding Code defined by a terminology system
..... text Σ 0..1 string Plain text representation of the concept
.... fastingStatus[x] Σ 0..1 Whether or how long patient abstained from food and/or drink
Binding: Hl7VSRelevantClincialInformation (3.0.0) (extensible): Codes describing the fasting status of the patient.
..... fastingStatusCodeableConcept CodeableConcept
..... fastingStatusDuration Duration
... processing 0..* BackboneElement Processing and processing step details
.... id 0..1 string Unique id for inter-element referencing
.... extension 0..* Extension Additional content defined by implementations
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... description 0..1 string Textual description of procedure
.... procedure 0..1 CodeableConcept Indicates the treatment step applied to the specimen
Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
.... additive 0..* Reference(Substance) Material used in the processing step
.... time[x] 0..1 Date and time of specimen processing
..... timeDateTime dateTime
..... timePeriod Period
... container 0..* BackboneElement Direct container of specimen (tube/slide, etc.)
.... id 0..1 string Unique id for inter-element referencing
.... Slices for extension 1..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
..... extension:device 1..1 Reference(Cross-version Profile for R5.Device for use in FHIR R4(0.1.0) | Device) R5: Device resource for the container (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.device
Constraints: ext-1
..... extension:location 0..1 Reference(Cross-version Profile for R5.Location for use in FHIR R4(0.1.0) | Location) R5: Where the container is (new)
URL: http://hl7.org/fhir/5.0/StructureDefinition/extension-Specimen.container.location
Constraints: ext-1
.... modifierExtension ?!Σ 0..* Extension Extensions that cannot be ignored even if unrecognized
Constraints: ext-1
.... identifier Σ 0..* Identifier Id for the container
.... description 0..1 string Textual description of the container
.... type 0..1 CodeableConcept Kind of container directly associated with specimen
Binding: SpecimenContainerType (example): Type of specimen container.
.... capacity 0..1 SimpleQuantity(4.0.1) Container volume or size
.... specimenQuantity 0..1 SimpleQuantity(4.0.1) Quantity of specimen within container
.... additive[x] 0..1 Additive associated with container
Binding: Hl7VSAdditivePreservative (3.0.0) (example): Substance added to specimen container.
..... additiveCodeableConcept CodeableConcept
..... additiveReference Reference(Substance)
... condition Σ 0..* CodeableConcept State of the specimen
Binding: Hl7VSSpecimenCondition (3.0.0) (extensible): Codes describing the state of the specimen.
... note 0..* Annotation Comments

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Specimen.language Base preferred Common Languages . 📍4.0.1 tx.fhir.org
Specimen.status Base required SpecimenStatus 📍4.0.1 FHIR Std.
Specimen.type Base example hl7VS-specimenType 📍3.0.0 THO v7.1
Specimen.subject.type Base extensible ResourceType . 📍4.0.1 tx.fhir.org
Specimen.collection.​collector.type Base extensible ResourceType . 📍4.0.1 tx.fhir.org
Specimen.collection.​method Base example FHIR Specimen Collection Method 📍4.0.1 FHIR Std.
Specimen.collection.​bodySite Base example SNOMED CT Body Structures 📍4.0.1 FHIR Std.
Specimen.collection.​fastingStatus[x] Base extensible hl7VS-relevantClincialInformation 📍3.0.0 THO v7.1
Specimen.processing.​procedure Base example Specimen processing procedure 📍4.0.1 FHIR Std.
Specimen.container.type Base example Specimen Container Type 📍4.0.1 FHIR Std.
Specimen.container.additive[x] Base example hl7VS-additivePreservative 📍3.0.0 THO v7.1
Specimen.condition Base extensible hl7VS-specimenCondition 📍3.0.0 THO v7.1

Constraints

Id Grade Path(s) Description Expression
dom-2 error Specimen If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Specimen If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Specimen If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Specimen If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Specimen A resource should have narrative for robust management text.`div`.exists()
ele-1 error Specimen.meta, Specimen.implicitRules, Specimen.language, Specimen.text, Specimen.extension, Specimen.extension:combined, Specimen.extension:role, Specimen.extension:feature, Specimen.modifierExtension, Specimen.identifier, Specimen.accessionIdentifier, Specimen.status, Specimen.type, Specimen.subject, Specimen.subject.extension, Specimen.subject.extension:subject, Specimen.subject.reference, Specimen.subject.type, Specimen.subject.identifier, Specimen.subject.display, Specimen.receivedTime, Specimen.parent, Specimen.request, Specimen.collection, Specimen.collection.extension, Specimen.collection.extension:device, Specimen.collection.extension:procedure, Specimen.collection.modifierExtension, Specimen.collection.collector, Specimen.collection.collector.extension, Specimen.collection.collector.extension:collector, Specimen.collection.collector.reference, Specimen.collection.collector.type, Specimen.collection.collector.identifier, Specimen.collection.collector.display, Specimen.collection.collected[x], Specimen.collection.duration, Specimen.collection.quantity, Specimen.collection.method, Specimen.collection.bodySite, Specimen.collection.bodySite.extension, Specimen.collection.bodySite.extension:bodySite, Specimen.collection.bodySite.coding, Specimen.collection.bodySite.text, Specimen.collection.fastingStatus[x], Specimen.processing, Specimen.processing.extension, Specimen.processing.modifierExtension, Specimen.processing.description, Specimen.processing.procedure, Specimen.processing.additive, Specimen.processing.time[x], Specimen.container, Specimen.container.extension, Specimen.container.extension:device, Specimen.container.extension:location, Specimen.container.modifierExtension, Specimen.container.identifier, Specimen.container.description, Specimen.container.type, Specimen.container.capacity, Specimen.container.specimenQuantity, Specimen.container.additive[x], Specimen.condition, Specimen.note All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Specimen.extension, Specimen.extension:combined, Specimen.extension:role, Specimen.extension:feature, Specimen.modifierExtension, Specimen.subject.extension, Specimen.subject.extension:subject, Specimen.collection.extension, Specimen.collection.extension:device, Specimen.collection.extension:procedure, Specimen.collection.modifierExtension, Specimen.collection.collector.extension, Specimen.collection.collector.extension:collector, Specimen.collection.bodySite.extension, Specimen.collection.bodySite.extension:bodySite, Specimen.processing.extension, Specimen.processing.modifierExtension, Specimen.container.extension, Specimen.container.extension:device, Specimen.container.extension:location, Specimen.container.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

 

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