FHIR Cross-Version Extensions package for FHIR R4 from FHIR R5 - Version 0.0.1-snapshot-2. See the Directory of published versions
| Official URL: http://hl7.org/fhir/5.0/ValueSet/R5-genomicstudy-type-for-R4 | Version: 0.0.1-snapshot-2 | |||
| Standards status: Informative | Maturity Level: 1 | Responsible: Clinical Genomics | Computable Name: R5_genomicstudy_type_for_R4 | |
| This cross-version ValueSet represents concepts from http://hl7.org/fhir/ValueSet/genomicstudy-type | 5.0.0 for use in FHIR R4. Concepts not present here have direct equivalent mappings crossing all versions from R5 to R4. |
References
http://hl7.org/fhir/genomicstudy-type version 5.0.0| Code | Display | Definition |
| alt-splc | Alternative splicing detection | Identification of multiple different processed mRNA transcripts from the same DNA template |
| chromatin | Chromatin conformation | Analysis of the spacial organization of chromatin within a cell |
| cnv | CNV detection | Detection of a change in the number of copies of a defined region of genomic DNA sequence resulting in structural variation when compared to the reference sequence |
| epi-alt-hist | Epigenetic Alterations - histone modifications | Detection of biochemical modifications covalently bound to the N-terminal tail of a histone protein. These modifications may alter chromatin compaction and gene expression |
| epi-alt-dna | Epigenetic Alterations -DNA methylation | Detection of the presence of an additional methyl group on a DNA nucleobase, which may alter gene transcription |
| fam-var-segr | Familial variant segregation | Determining if a variant identified in an individual is present in other family members |
| func-var | Functional variation detection | Detection of sequence variants which may alter gene expression or gene product function when compared to the reference sequence |
| gene-expression | Gene expression profiling | Measurement and characterization of activity from all gene products |
| post-trans-mod | Post-translational Modification Identification | Detection of biochemical modifications covalently bound to the amino acid monomers of a processed protein |
| snp | SNP Detection | Determination of which nucleotide is base present at a known variable location of the genomic sequence |
| str | STR count | Quantification of the number of sequential microsatellite units in a repetitive sequence region |
| struc-var | Structural variation detection | Detection of deletions, insertions, or rearrangements of DNA segments compared to the reference sequence |
This value set expansion contains 12 concepts.
| Code | System | Display | Definition |
| alt-splc | http://hl7.org/fhir/genomicstudy-type | Alternative splicing detection | Identification of multiple different processed mRNA transcripts from the same DNA template |
| chromatin | http://hl7.org/fhir/genomicstudy-type | Chromatin conformation | Analysis of the spacial organization of chromatin within a cell |
| cnv | http://hl7.org/fhir/genomicstudy-type | CNV detection | Detection of a change in the number of copies of a defined region of genomic DNA sequence resulting in structural variation when compared to the reference sequence |
| epi-alt-hist | http://hl7.org/fhir/genomicstudy-type | Epigenetic Alterations - histone modifications | Detection of biochemical modifications covalently bound to the N-terminal tail of a histone protein. These modifications may alter chromatin compaction and gene expression |
| epi-alt-dna | http://hl7.org/fhir/genomicstudy-type | Epigenetic Alterations -DNA methylation | Detection of the presence of an additional methyl group on a DNA nucleobase, which may alter gene transcription |
| fam-var-segr | http://hl7.org/fhir/genomicstudy-type | Familial variant segregation | Determining if a variant identified in an individual is present in other family members |
| func-var | http://hl7.org/fhir/genomicstudy-type | Functional variation detection | Detection of sequence variants which may alter gene expression or gene product function when compared to the reference sequence |
| gene-expression | http://hl7.org/fhir/genomicstudy-type | Gene expression profiling | Measurement and characterization of activity from all gene products |
| post-trans-mod | http://hl7.org/fhir/genomicstudy-type | Post-translational Modification Identification | Detection of biochemical modifications covalently bound to the amino acid monomers of a processed protein |
| snp | http://hl7.org/fhir/genomicstudy-type | SNP Detection | Determination of which nucleotide is base present at a known variable location of the genomic sequence |
| str | http://hl7.org/fhir/genomicstudy-type | STR count | Quantification of the number of sequential microsatellite units in a repetitive sequence region |
| struc-var | http://hl7.org/fhir/genomicstudy-type | Structural variation detection | Detection of deletions, insertions, or rearrangements of DNA segments compared to the reference sequence |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |