FHIR Cross-Version Extensions package for FHIR R4 from FHIR R5
0.0.1-snapshot-2 - informative International flag

FHIR Cross-Version Extensions package for FHIR R4 from FHIR R5 - Version 0.0.1-snapshot-2. See the Directory of published versions

ValueSet: Cross-version VS for R5.GenomicStudyType for use in FHIR R4

Official URL: http://hl7.org/fhir/5.0/ValueSet/R5-genomicstudy-type-for-R4 Version: 0.0.1-snapshot-2
Standards status: Informative Maturity Level: 1 Responsible: Clinical Genomics Computable Name: R5_genomicstudy_type_for_R4

This cross-version ValueSet represents concepts from http://hl7.org/fhir/ValueSet/genomicstudy-type 5.0.0 for use in FHIR R4. Concepts not present here have direct equivalent mappings crossing all versions from R5 to R4.

References

Logical Definition (CLD)

  • Include these codes as defined in http://hl7.org/fhir/genomicstudy-type version 5.0.0
    CodeDisplayDefinition
    alt-splcAlternative splicing detectionIdentification of multiple different processed mRNA transcripts from the same DNA template
    chromatinChromatin conformationAnalysis of the spacial organization of chromatin within a cell
    cnvCNV detectionDetection of a change in the number of copies of a defined region of genomic DNA sequence resulting in structural variation when compared to the reference sequence
    epi-alt-histEpigenetic Alterations - histone modificationsDetection of biochemical modifications covalently bound to the N-terminal tail of a histone protein. These modifications may alter chromatin compaction and gene expression
    epi-alt-dnaEpigenetic Alterations -DNA methylationDetection of the presence of an additional methyl group on a DNA nucleobase, which may alter gene transcription
    fam-var-segrFamilial variant segregationDetermining if a variant identified in an individual is present in other family members
    func-varFunctional variation detectionDetection of sequence variants which may alter gene expression or gene product function when compared to the reference sequence
    gene-expressionGene expression profilingMeasurement and characterization of activity from all gene products
    post-trans-modPost-translational Modification IdentificationDetection of biochemical modifications covalently bound to the amino acid monomers of a processed protein
    snpSNP DetectionDetermination of which nucleotide is base present at a known variable location of the genomic sequence
    strSTR countQuantification of the number of sequential microsatellite units in a repetitive sequence region
    struc-varStructural variation detectionDetection of deletions, insertions, or rearrangements of DNA segments compared to the reference sequence

 

Expansion

This value set expansion contains 12 concepts.

CodeSystemDisplayDefinition
  alt-splchttp://hl7.org/fhir/genomicstudy-typeAlternative splicing detectionIdentification of multiple different processed mRNA transcripts from the same DNA template
  chromatinhttp://hl7.org/fhir/genomicstudy-typeChromatin conformationAnalysis of the spacial organization of chromatin within a cell
  cnvhttp://hl7.org/fhir/genomicstudy-typeCNV detectionDetection of a change in the number of copies of a defined region of genomic DNA sequence resulting in structural variation when compared to the reference sequence
  epi-alt-histhttp://hl7.org/fhir/genomicstudy-typeEpigenetic Alterations - histone modificationsDetection of biochemical modifications covalently bound to the N-terminal tail of a histone protein. These modifications may alter chromatin compaction and gene expression
  epi-alt-dnahttp://hl7.org/fhir/genomicstudy-typeEpigenetic Alterations -DNA methylationDetection of the presence of an additional methyl group on a DNA nucleobase, which may alter gene transcription
  fam-var-segrhttp://hl7.org/fhir/genomicstudy-typeFamilial variant segregationDetermining if a variant identified in an individual is present in other family members
  func-varhttp://hl7.org/fhir/genomicstudy-typeFunctional variation detectionDetection of sequence variants which may alter gene expression or gene product function when compared to the reference sequence
  gene-expressionhttp://hl7.org/fhir/genomicstudy-typeGene expression profilingMeasurement and characterization of activity from all gene products
  post-trans-modhttp://hl7.org/fhir/genomicstudy-typePost-translational Modification IdentificationDetection of biochemical modifications covalently bound to the amino acid monomers of a processed protein
  snphttp://hl7.org/fhir/genomicstudy-typeSNP DetectionDetermination of which nucleotide is base present at a known variable location of the genomic sequence
  strhttp://hl7.org/fhir/genomicstudy-typeSTR countQuantification of the number of sequential microsatellite units in a repetitive sequence region
  struc-varhttp://hl7.org/fhir/genomicstudy-typeStructural variation detectionDetection of deletions, insertions, or rearrangements of DNA segments compared to the reference sequence

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
System The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code