FHIR Cross-Version Extensions package for FHIR R4 from FHIR R5 - Version 0.0.1-snapshot-2. See the Directory of published versions
| Official URL: http://hl7.org/fhir/5.0/ValueSet/R5-genomicstudy-methodtype-for-R4 | Version: 0.0.1-snapshot-2 | |||
| Standards status: Informative | Maturity Level: 1 | Responsible: Clinical Genomics | Computable Name: R5_genomicstudy_methodtype_for_R4 | |
| This cross-version ValueSet represents concepts from http://hl7.org/fhir/ValueSet/genomicstudy-methodtype | 5.0.0 for use in FHIR R4. Concepts not present here have direct equivalent mappings crossing all versions from R5 to R4. |
References
http://hl7.org/fhir/genomicstudy-methodtype version 5.0.0| Code | Display |
| biochemical-genetics | Biochemical Genetics |
| cytogenetics | Cytogenetics |
| molecular-genetics | Molecular Genetics |
| analyte | Analyte |
| chromosome-breakage-studies | Chromosome breakage studies |
| deletion-duplication-analysis | Deletion/duplication analysis |
| detection-of-homozygosity | Detection of homozygosity |
| enzyme-assay | Enzyme assay |
| fish-interphase | FISH-interphase |
| fish-metaphase | FISH-metaphase |
| flow-cytometry | Flow cytometry |
| fish | Fluorescence in situ hybridization (FISH) |
| immunohistochemistry | Immunohistochemistry |
| karyotyping | Karyotyping |
| linkage-analysis | Linkage analysis |
| methylation-analysis | Methylation analysis |
| msi | Microsatellite instability testing (MSI) |
| m-fish | Multicolor FISH (M-FISH) |
| mutation-scanning-of-select-exons | Mutation scanning of select exons |
| mutation-scanning-of-the-entire-coding-region | Mutation scanning of the entire coding region |
| protein-analysis | Protein analysis |
| protein-expression | Protein expression |
| rna-analysis | RNA analysis |
| sequence-analysis-of-select-exons | Sequence analysis of select exons |
| sequence-analysis-of-the-entire-coding-region | Sequence analysis of the entire coding region |
| sister-chromatid-exchange | Sister chromatid exchange |
| targeted-variant-analysis | Targeted variant analysis |
| udp | Uniparental disomy study (UPD) |
| aspe | Allele-specific primer extension (ASPE) |
| alternative-splicing-detection | Alternative splicing detection |
| bi-directional-sanger-sequence-analysis | Bi-directional Sanger Sequence Analysis |
| c-banding | C-banding |
| cia | Chemiluminescent Immunoassay (CIA) |
| chromatin-immunoprecipitation-on-chip | Chromatin Immunoprecipitation on ChIP |
| comparative-genomic-hybridization | Comparative Genomic Hybridization |
| damid | DamID |
| digital-virtual-karyotyping | Digital / Virtual karyotyping |
| digital-microfluidic-microspheres | Digital microfluidic microspheres |
| enzymatic-levels | Enzymatic levels |
| enzyme-activity | Enzyme activity |
| elisa | Enzyme-Linked Immunosorbent Assays (ELISA) |
| fluorometry | Fluorometry |
| fusion-genes-microarrays | Fusion genes microarrays |
| g-banding | G-banding |
| gc-ms | Gas chromatography–mass spectrometry (GC-MS) |
| gene-expression-profiling | Gene expression profiling |
| gene-id | GeneID |
| gold-nanoparticle-probe-technology | Gold nanoparticle probe technology |
| hplc | High-performance liquid chromatography (HPLC) |
| lc-ms | Liquid chromatography mass spectrometry (LC-MS) |
| lc-ms-ms | Liquid chromatography-tandem mass spectrometry (LC-MS/MS) |
| metabolite-levels | Metabolite levels |
| methylation-specific-pcr | Methylation-specific PCR |
| microarray | Microarray |
| mlpa | Multiplex Ligation-dependent Probe Amplification (MLPA) |
| ngs-mps | Next-Generation (NGS)/Massively parallel sequencing (MPS) |
| ola | Oligonucleotide Ligation Assay (OLA) |
| oligonucleotide-hybridization-based-dna-sequencing | Oligonucleotide hybridization-based DNA sequencing |
| other | Other |
| pcr | PCR |
| pcr-with-allele-specific-hybridization | PCR with allele specific hybridization |
| pcr-rflp-with-southern-hybridization | PCR-RFLP with Southern hybridization |
| protein-truncation-test | Protein truncation test |
| pyrosequencing | Pyrosequencing |
| q-banding | Q-banding |
| qpcr | Quantitative PCR (qPCR) |
| r-banding | R-banding |
| rflp | RFLP |
| rt-lamp | RT-LAMP |
| rt-pcr | RT-PCR |
| rt-pcr-with-gel-analysis | RT-PCR with gel analysis |
| rt-qpcr | RT-qPCR |
| snp-detection | SNP Detection |
| silver-staining | Silver staining |
| sky | Spectral karyotyping (SKY) |
| t-banding | T-banding |
| ms-ms | Tandem mass spectrometry (MS/MS) |
| tetra-nucleotide-repeat-by-pcr-or-southern-blot | Tetra-nucleotide repeat by PCR or Southern Blot |
| tiling-arrays | Tiling Arrays |
| trinucleotide-repeat-by-pcr-or-southern-blot | Trinucleotide repeat by PCR or Southern Blot |
| uni-directional-sanger-sequencing | Uni-directional Sanger sequencing |
This value set expansion contains 81 concepts.
| Code | System | Display |
| biochemical-genetics | http://hl7.org/fhir/genomicstudy-methodtype | Biochemical Genetics |
| cytogenetics | http://hl7.org/fhir/genomicstudy-methodtype | Cytogenetics |
| molecular-genetics | http://hl7.org/fhir/genomicstudy-methodtype | Molecular Genetics |
| analyte | http://hl7.org/fhir/genomicstudy-methodtype | Analyte |
| chromosome-breakage-studies | http://hl7.org/fhir/genomicstudy-methodtype | Chromosome breakage studies |
| deletion-duplication-analysis | http://hl7.org/fhir/genomicstudy-methodtype | Deletion/duplication analysis |
| detection-of-homozygosity | http://hl7.org/fhir/genomicstudy-methodtype | Detection of homozygosity |
| enzyme-assay | http://hl7.org/fhir/genomicstudy-methodtype | Enzyme assay |
| fish-interphase | http://hl7.org/fhir/genomicstudy-methodtype | FISH-interphase |
| fish-metaphase | http://hl7.org/fhir/genomicstudy-methodtype | FISH-metaphase |
| flow-cytometry | http://hl7.org/fhir/genomicstudy-methodtype | Flow cytometry |
| fish | http://hl7.org/fhir/genomicstudy-methodtype | Fluorescence in situ hybridization (FISH) |
| immunohistochemistry | http://hl7.org/fhir/genomicstudy-methodtype | Immunohistochemistry |
| karyotyping | http://hl7.org/fhir/genomicstudy-methodtype | Karyotyping |
| linkage-analysis | http://hl7.org/fhir/genomicstudy-methodtype | Linkage analysis |
| methylation-analysis | http://hl7.org/fhir/genomicstudy-methodtype | Methylation analysis |
| msi | http://hl7.org/fhir/genomicstudy-methodtype | Microsatellite instability testing (MSI) |
| m-fish | http://hl7.org/fhir/genomicstudy-methodtype | Multicolor FISH (M-FISH) |
| mutation-scanning-of-select-exons | http://hl7.org/fhir/genomicstudy-methodtype | Mutation scanning of select exons |
| mutation-scanning-of-the-entire-coding-region | http://hl7.org/fhir/genomicstudy-methodtype | Mutation scanning of the entire coding region |
| protein-analysis | http://hl7.org/fhir/genomicstudy-methodtype | Protein analysis |
| protein-expression | http://hl7.org/fhir/genomicstudy-methodtype | Protein expression |
| rna-analysis | http://hl7.org/fhir/genomicstudy-methodtype | RNA analysis |
| sequence-analysis-of-select-exons | http://hl7.org/fhir/genomicstudy-methodtype | Sequence analysis of select exons |
| sequence-analysis-of-the-entire-coding-region | http://hl7.org/fhir/genomicstudy-methodtype | Sequence analysis of the entire coding region |
| sister-chromatid-exchange | http://hl7.org/fhir/genomicstudy-methodtype | Sister chromatid exchange |
| targeted-variant-analysis | http://hl7.org/fhir/genomicstudy-methodtype | Targeted variant analysis |
| udp | http://hl7.org/fhir/genomicstudy-methodtype | Uniparental disomy study (UPD) |
| aspe | http://hl7.org/fhir/genomicstudy-methodtype | Allele-specific primer extension (ASPE) |
| alternative-splicing-detection | http://hl7.org/fhir/genomicstudy-methodtype | Alternative splicing detection |
| bi-directional-sanger-sequence-analysis | http://hl7.org/fhir/genomicstudy-methodtype | Bi-directional Sanger Sequence Analysis |
| c-banding | http://hl7.org/fhir/genomicstudy-methodtype | C-banding |
| cia | http://hl7.org/fhir/genomicstudy-methodtype | Chemiluminescent Immunoassay (CIA) |
| chromatin-immunoprecipitation-on-chip | http://hl7.org/fhir/genomicstudy-methodtype | Chromatin Immunoprecipitation on ChIP |
| comparative-genomic-hybridization | http://hl7.org/fhir/genomicstudy-methodtype | Comparative Genomic Hybridization |
| damid | http://hl7.org/fhir/genomicstudy-methodtype | DamID |
| digital-virtual-karyotyping | http://hl7.org/fhir/genomicstudy-methodtype | Digital / Virtual karyotyping |
| digital-microfluidic-microspheres | http://hl7.org/fhir/genomicstudy-methodtype | Digital microfluidic microspheres |
| enzymatic-levels | http://hl7.org/fhir/genomicstudy-methodtype | Enzymatic levels |
| enzyme-activity | http://hl7.org/fhir/genomicstudy-methodtype | Enzyme activity |
| elisa | http://hl7.org/fhir/genomicstudy-methodtype | Enzyme-Linked Immunosorbent Assays (ELISA) |
| fluorometry | http://hl7.org/fhir/genomicstudy-methodtype | Fluorometry |
| fusion-genes-microarrays | http://hl7.org/fhir/genomicstudy-methodtype | Fusion genes microarrays |
| g-banding | http://hl7.org/fhir/genomicstudy-methodtype | G-banding |
| gc-ms | http://hl7.org/fhir/genomicstudy-methodtype | Gas chromatography–mass spectrometry (GC-MS) |
| gene-expression-profiling | http://hl7.org/fhir/genomicstudy-methodtype | Gene expression profiling |
| gene-id | http://hl7.org/fhir/genomicstudy-methodtype | GeneID |
| gold-nanoparticle-probe-technology | http://hl7.org/fhir/genomicstudy-methodtype | Gold nanoparticle probe technology |
| hplc | http://hl7.org/fhir/genomicstudy-methodtype | High-performance liquid chromatography (HPLC) |
| lc-ms | http://hl7.org/fhir/genomicstudy-methodtype | Liquid chromatography mass spectrometry (LC-MS) |
| lc-ms-ms | http://hl7.org/fhir/genomicstudy-methodtype | Liquid chromatography-tandem mass spectrometry (LC-MS/MS) |
| metabolite-levels | http://hl7.org/fhir/genomicstudy-methodtype | Metabolite levels |
| methylation-specific-pcr | http://hl7.org/fhir/genomicstudy-methodtype | Methylation-specific PCR |
| microarray | http://hl7.org/fhir/genomicstudy-methodtype | Microarray |
| mlpa | http://hl7.org/fhir/genomicstudy-methodtype | Multiplex Ligation-dependent Probe Amplification (MLPA) |
| ngs-mps | http://hl7.org/fhir/genomicstudy-methodtype | Next-Generation (NGS)/Massively parallel sequencing (MPS) |
| ola | http://hl7.org/fhir/genomicstudy-methodtype | Oligonucleotide Ligation Assay (OLA) |
| oligonucleotide-hybridization-based-dna-sequencing | http://hl7.org/fhir/genomicstudy-methodtype | Oligonucleotide hybridization-based DNA sequencing |
| other | http://hl7.org/fhir/genomicstudy-methodtype | Other |
| pcr | http://hl7.org/fhir/genomicstudy-methodtype | PCR |
| pcr-with-allele-specific-hybridization | http://hl7.org/fhir/genomicstudy-methodtype | PCR with allele specific hybridization |
| pcr-rflp-with-southern-hybridization | http://hl7.org/fhir/genomicstudy-methodtype | PCR-RFLP with Southern hybridization |
| protein-truncation-test | http://hl7.org/fhir/genomicstudy-methodtype | Protein truncation test |
| pyrosequencing | http://hl7.org/fhir/genomicstudy-methodtype | Pyrosequencing |
| q-banding | http://hl7.org/fhir/genomicstudy-methodtype | Q-banding |
| qpcr | http://hl7.org/fhir/genomicstudy-methodtype | Quantitative PCR (qPCR) |
| r-banding | http://hl7.org/fhir/genomicstudy-methodtype | R-banding |
| rflp | http://hl7.org/fhir/genomicstudy-methodtype | RFLP |
| rt-lamp | http://hl7.org/fhir/genomicstudy-methodtype | RT-LAMP |
| rt-pcr | http://hl7.org/fhir/genomicstudy-methodtype | RT-PCR |
| rt-pcr-with-gel-analysis | http://hl7.org/fhir/genomicstudy-methodtype | RT-PCR with gel analysis |
| rt-qpcr | http://hl7.org/fhir/genomicstudy-methodtype | RT-qPCR |
| snp-detection | http://hl7.org/fhir/genomicstudy-methodtype | SNP Detection |
| silver-staining | http://hl7.org/fhir/genomicstudy-methodtype | Silver staining |
| sky | http://hl7.org/fhir/genomicstudy-methodtype | Spectral karyotyping (SKY) |
| t-banding | http://hl7.org/fhir/genomicstudy-methodtype | T-banding |
| ms-ms | http://hl7.org/fhir/genomicstudy-methodtype | Tandem mass spectrometry (MS/MS) |
| tetra-nucleotide-repeat-by-pcr-or-southern-blot | http://hl7.org/fhir/genomicstudy-methodtype | Tetra-nucleotide repeat by PCR or Southern Blot |
| tiling-arrays | http://hl7.org/fhir/genomicstudy-methodtype | Tiling Arrays |
| trinucleotide-repeat-by-pcr-or-southern-blot | http://hl7.org/fhir/genomicstudy-methodtype | Trinucleotide repeat by PCR or Southern Blot |
| uni-directional-sanger-sequencing | http://hl7.org/fhir/genomicstudy-methodtype | Uni-directional Sanger sequencing |
Explanation of the columns that may appear on this page:
| Level | A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies |
| System | The source of the definition of the code (when the value set draws in codes defined elsewhere) |
| Code | The code (used as the code in the resource instance) |
| Display | The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application |
| Definition | An explanation of the meaning of the concept |
| Comments | Additional notes about how to use the code |