Extensions for Using Data Elements from FHIR R4 in FHIR R4B
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Extensions for Using Data Elements from FHIR R4 in FHIR R4B - Downloaded Version null See the Directory of published versions

Resource Profile: Profile_R4_SubstanceProtein_R4B

Official URL: http://hl7.org/fhir/4.0/StructureDefinition/profile-SubstanceProtein Version: 0.1.0
Standards status: Trial-use Maturity Level: 0 Computable Name: Profile_R4_SubstanceProtein_R4B

This cross-version profile allows R4 SubstanceProtein content to be represented via FHIR R4B Basic resources.

Usages:

You can also check for usages in the FHIR IG Statistics

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Basic 0..* Basic(4.3.0) Resource for non-supported content
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
.... extension:sequenceType 0..1 CodeableConcept R4: The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.sequenceType
Constraints: ext-1
.... extension:numberOfSubunits 0..1 integer R4: Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.numberOfSubunits
Constraints: ext-1
.... extension:disulfideLinkage 0..* string R4: The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.disulfideLinkage
Constraints: ext-1
.... extension:subunit 0..* (Complex) R4: This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.subunit
Constraints: ext-1
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
Constraints: ext-1

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Basic.code Base example Basic Resource Types 📍4.3.0 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Basic If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Basic If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where(((id.exists() and ('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url)))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(uri) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Basic If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Basic If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Basic A resource should have narrative for robust management text.`div`.exists()
ele-1 error Basic.implicitRules, Basic.extension, Basic.extension:sequenceType, Basic.extension:numberOfSubunits, Basic.extension:disulfideLinkage, Basic.extension:subunit, Basic.modifierExtension, Basic.code All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Basic.extension, Basic.extension:sequenceType, Basic.extension:numberOfSubunits, Basic.extension:disulfideLinkage, Basic.extension:subunit, Basic.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

This structure is derived from Basic

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Basic 0..* Basic(4.3.0) Resource for non-supported content
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:sequenceType 0..1 CodeableConcept R4: The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.sequenceType
.... extension:numberOfSubunits 0..1 integer R4: Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.numberOfSubunits
.... extension:disulfideLinkage 0..* string R4: The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.disulfideLinkage
.... extension:subunit 0..* (Complex) R4: This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.subunit

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Basic 0..* Basic(4.3.0) Resource for non-supported content
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
Constraints: dom-r4b
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
.... extension:sequenceType 0..1 CodeableConcept R4: The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.sequenceType
Constraints: ext-1
.... extension:numberOfSubunits 0..1 integer R4: Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.numberOfSubunits
Constraints: ext-1
.... extension:disulfideLinkage 0..* string R4: The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.disulfideLinkage
Constraints: ext-1
.... extension:subunit 0..* (Complex) R4: This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.subunit
Constraints: ext-1
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
Constraints: ext-1
... identifier Σ 0..* Identifier Business identifier
... code ?!Σ 1..1 CodeableConcept Kind of Resource
Binding: BasicResourceTypes (example): HL7-maintained set of codes for "Basic" resources
... subject Σ 0..1 Reference(Resource) Identifies the focus of this resource
... created Σ 0..1 date When created
... author Σ 0..1 Reference(Practitioner | PractitionerRole | Patient | RelatedPerson | Organization) Who created

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Basic.language Base preferred Common Languages 📍4.3.0 FHIR Std.
Basic.code Base example Basic Resource Types 📍4.3.0 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Basic If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Basic If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where(((id.exists() and ('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url)))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(uri) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Basic If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Basic If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Basic A resource should have narrative for robust management text.`div`.exists()
dom-r4b warning Basic.contained Containing new R4B resources within R4 resources may cause interoperability issues if instances are shared with R4 systems ($this is Citation or $this is Evidence or $this is EvidenceReport or $this is EvidenceVariable or $this is MedicinalProductDefinition or $this is PackagedProductDefinition or $this is AdministrableProductDefinition or $this is Ingredient or $this is ClinicalUseDefinition or $this is RegulatedAuthorization or $this is SubstanceDefinition or $this is SubscriptionStatus or $this is SubscriptionTopic) implies (%resource is Citation or %resource is Evidence or %resource is EvidenceReport or %resource is EvidenceVariable or %resource is MedicinalProductDefinition or %resource is PackagedProductDefinition or %resource is AdministrableProductDefinition or %resource is Ingredient or %resource is ClinicalUseDefinition or %resource is RegulatedAuthorization or %resource is SubstanceDefinition or %resource is SubscriptionStatus or %resource is SubscriptionTopic)
ele-1 error Basic.meta, Basic.implicitRules, Basic.language, Basic.text, Basic.extension, Basic.extension:sequenceType, Basic.extension:numberOfSubunits, Basic.extension:disulfideLinkage, Basic.extension:subunit, Basic.modifierExtension, Basic.identifier, Basic.code, Basic.subject, Basic.created, Basic.author All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Basic.extension, Basic.extension:sequenceType, Basic.extension:numberOfSubunits, Basic.extension:disulfideLinkage, Basic.extension:subunit, Basic.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

Key Elements View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Basic 0..* Basic(4.3.0) Resource for non-supported content
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
.... extension:sequenceType 0..1 CodeableConcept R4: The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.sequenceType
Constraints: ext-1
.... extension:numberOfSubunits 0..1 integer R4: Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.numberOfSubunits
Constraints: ext-1
.... extension:disulfideLinkage 0..* string R4: The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.disulfideLinkage
Constraints: ext-1
.... extension:subunit 0..* (Complex) R4: This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.subunit
Constraints: ext-1
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
Constraints: ext-1

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Basic.code Base example Basic Resource Types 📍4.3.0 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Basic If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Basic If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where(((id.exists() and ('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url)))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(uri) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Basic If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Basic If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Basic A resource should have narrative for robust management text.`div`.exists()
ele-1 error Basic.implicitRules, Basic.extension, Basic.extension:sequenceType, Basic.extension:numberOfSubunits, Basic.extension:disulfideLinkage, Basic.extension:subunit, Basic.modifierExtension, Basic.code All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Basic.extension, Basic.extension:sequenceType, Basic.extension:numberOfSubunits, Basic.extension:disulfideLinkage, Basic.extension:subunit, Basic.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

Differential View

This structure is derived from Basic

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Basic 0..* Basic(4.3.0) Resource for non-supported content
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
.... extension:sequenceType 0..1 CodeableConcept R4: The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.sequenceType
.... extension:numberOfSubunits 0..1 integer R4: Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.numberOfSubunits
.... extension:disulfideLinkage 0..* string R4: The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.disulfideLinkage
.... extension:subunit 0..* (Complex) R4: This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.subunit

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. Basic 0..* Basic(4.3.0) Resource for non-supported content
... id Σ 0..1 id Logical id of this artifact
... meta Σ 0..1 Meta Metadata about the resource
... implicitRules ?!Σ 0..1 uri A set of rules under which this content was created
... text 0..1 Narrative Text summary of the resource, for human interpretation
This profile does not constrain the narrative in regard to content, language, or traceability to data elements
... contained 0..* Resource Contained, inline Resources
Constraints: dom-r4b
... Slices for extension 0..* Extension Extension
Slice: Unordered, Open by value:url
Constraints: ext-1
.... extension:sequenceType 0..1 CodeableConcept R4: The SubstanceProtein descriptive elements will only be used when a complete or partial amino acid sequence is available or derivable from a nucleic acid sequence (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.sequenceType
Constraints: ext-1
.... extension:numberOfSubunits 0..1 integer R4: Number of linear sequences of amino acids linked through peptide bonds. The number of subunits constituting the SubstanceProtein shall be described. It is possible that the number of subunits can be variable (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.numberOfSubunits
Constraints: ext-1
.... extension:disulfideLinkage 0..* string R4: The disulphide bond between two cysteine residues either on the same subunit or on two different subunits shall be described. The position of the disulfide bonds in the SubstanceProtein shall be listed in increasing order of subunit number and position within subunit followed by the abbreviation of the amino acids involved. The disulfide linkage positions shall actually contain the amino acid Cysteine at the respective positions (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.disulfideLinkage
Constraints: ext-1
.... extension:subunit 0..* (Complex) R4: This subclause refers to the description of each subunit constituting the SubstanceProtein. A subunit is a linear sequence of amino acids linked through peptide bonds. The Subunit information shall be provided when the finished SubstanceProtein is a complex of multiple sequences; subunits are not used to delineate domains within a single sequence. Subunits are listed in order of decreasing length; sequences of the same length will be ordered by decreasing molecular weight; subunits that have identical sequences will be repeated multiple times (new)
URL: http://hl7.org/fhir/4.0/StructureDefinition/extension-SubstanceProtein.subunit
Constraints: ext-1
... modifierExtension ?! 0..* Extension Extensions that cannot be ignored
Constraints: ext-1
... identifier Σ 0..* Identifier Business identifier
... code ?!Σ 1..1 CodeableConcept Kind of Resource
Binding: BasicResourceTypes (example): HL7-maintained set of codes for "Basic" resources
... subject Σ 0..1 Reference(Resource) Identifies the focus of this resource
... created Σ 0..1 date When created
... author Σ 0..1 Reference(Practitioner | PractitionerRole | Patient | RelatedPerson | Organization) Who created

doco Documentation for this format

Terminology Bindings

Path Status Usage ValueSet Version Source
Basic.language Base preferred Common Languages 📍4.3.0 FHIR Std.
Basic.code Base example Basic Resource Types 📍4.3.0 FHIR Std.

Constraints

Id Grade Path(s) Description Expression
dom-2 error Basic If the resource is contained in another resource, it SHALL NOT contain nested Resources contained.contained.empty()
dom-3 error Basic If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource contained.where(((id.exists() and ('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url)))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(uri) = '#').exists()).not()).trace('unmatched', id).empty()
dom-4 error Basic If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated contained.meta.versionId.empty() and contained.meta.lastUpdated.empty()
dom-5 error Basic If a resource is contained in another resource, it SHALL NOT have a security label contained.meta.security.empty()
dom-6 best practice Basic A resource should have narrative for robust management text.`div`.exists()
dom-r4b warning Basic.contained Containing new R4B resources within R4 resources may cause interoperability issues if instances are shared with R4 systems ($this is Citation or $this is Evidence or $this is EvidenceReport or $this is EvidenceVariable or $this is MedicinalProductDefinition or $this is PackagedProductDefinition or $this is AdministrableProductDefinition or $this is Ingredient or $this is ClinicalUseDefinition or $this is RegulatedAuthorization or $this is SubstanceDefinition or $this is SubscriptionStatus or $this is SubscriptionTopic) implies (%resource is Citation or %resource is Evidence or %resource is EvidenceReport or %resource is EvidenceVariable or %resource is MedicinalProductDefinition or %resource is PackagedProductDefinition or %resource is AdministrableProductDefinition or %resource is Ingredient or %resource is ClinicalUseDefinition or %resource is RegulatedAuthorization or %resource is SubstanceDefinition or %resource is SubscriptionStatus or %resource is SubscriptionTopic)
ele-1 error Basic.meta, Basic.implicitRules, Basic.language, Basic.text, Basic.extension, Basic.extension:sequenceType, Basic.extension:numberOfSubunits, Basic.extension:disulfideLinkage, Basic.extension:subunit, Basic.modifierExtension, Basic.identifier, Basic.code, Basic.subject, Basic.created, Basic.author All FHIR elements must have a @value or children hasValue() or (children().count() > id.count())
ext-1 error Basic.extension, Basic.extension:sequenceType, Basic.extension:numberOfSubunits, Basic.extension:disulfideLinkage, Basic.extension:subunit, Basic.modifierExtension Must have either extensions or value[x], not both extension.exists() != value.exists()

 

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