Situational Awareness for Novel Epidemic Response
1.0.0 - STU Release

This page is part of the Situational Awareness for Novel Epidemic Response (v1.0.0: STU 1) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

ValueSet: SARSCoV2 Genetic Labs

Summary

Defining URL:http://hl7.org/fhir/uv/saner/ValueSet/SARSCoV2GeneticLabs
Version:1.0.0
Name:SARSCoV2GeneticLabs
Title:SARSCoV2 Genetic Labs
Status:Draft as of 2021-09-07T19:08:29+00:00
Definition:

This Value Set identifies Lab tests using gene-based testing instead of other methods (e.g., Antibody testing)

Publisher:HL7 International Public Health Workgroup
Copyright:

This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc

Source Resource:XML / JSON / Turtle

References

This value set is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)

Logical Definition (CLD)

  • Include these codes as defined in http://loinc.org
    CodeDisplay
    94307-6SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N1
    94308-4SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using CDC primer-probe set N2
    94309-2SARS-CoV-2 (COVID-19) RNA [Presence] in Unspecified specimen by NAA with probe detection
    94310-0SARS-like coronavirus N gene [Presence] in Unspecified specimen by NAA with probe detection
    94314-2SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Unspecified specimen by NAA with probe detection
    94315-9SARS-related coronavirus E gene [Presence] in Unspecified specimen by NAA with probe detection
    94316-7SARS-CoV-2 (COVID-19) N gene [Presence] in Unspecified specimen by NAA with probe detection
    94500-6SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with probe detection
    94533-7SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by NAA with probe detection
    94534-5SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory specimen by NAA with probe detection
    94559-2SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory specimen by NAA with probe detection

 

Expansion

This value set contains 11 concepts

Expansion based on Loinc v2.71

All codes in this table are from the system http://loinc.org

CodeDisplay
94307-6SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N1
94308-4SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N2
94309-2SARS-CoV-2 (COVID-19) RNA [Presence] in Specimen by NAA with probe detection
94310-0SARS-related coronavirus N gene [Presence] in Specimen by Nucleic acid amplification using CDC primer-probe set N3
94314-2SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Specimen by NAA with probe detection
94315-9SARS-related coronavirus E gene [Presence] in Specimen by NAA with probe detection
94316-7SARS-CoV-2 (COVID-19) N gene [Presence] in Specimen by NAA with probe detection
94500-6SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory specimen by NAA with probe detection
94533-7SARS-CoV-2 (COVID-19) N gene [Presence] in Respiratory specimen by NAA with probe detection
94534-5SARS-CoV-2 (COVID-19) RdRp gene [Presence] in Respiratory specimen by NAA with probe detection
94559-2SARS-CoV-2 (COVID-19) ORF1ab region [Presence] in Respiratory specimen by NAA with probe detection

Explanation of the columns that may appear on this page:

Level A few code lists that FHIR defines are hierarchical - each code is assigned a level. In this scheme, some codes are under other codes, and imply that the code they are under also applies
Source The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance)
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code