FHIR to OMOP FHIR IG
1.0.0-ballot - INFORMATIVE 1 - Ballot
FHIR to OMOP FHIR IG
1.0.0-ballot - INFORMATIVE 1 - Ballot
This page is part of the Vulcan FHIR to OMOP FHIR Implementation Guide (v1.0.0-ballot: INFORMATIVE 1 Ballot 1) based on FHIR (HL7® FHIR® Standard) v5.0.0. No current official version has been published yet. For a full list of available versions, see the Directory of published versions
| Page standards status: Informative | Maturity Level: 1 |
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
a fhir:StructureMap ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "EncounterVisitMap"] ; #
fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: StructureMap EncounterVisitMap</b></p><a name=\"EncounterVisitMap\"> </a><a name=\"hcEncounterVisitMap\"> </a><pre class=\"fml\">#xD;\n<span style=\"color: #cc00cc\">/// <b>url</b> = </span><span style=\"color: blue\">'http://hl7.org/fhir/uv/omop/StructureMap/EncounterVisitMap'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>name</b> = </span><span style=\"color: blue\">'EncounterVisitMap'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>title</b> = </span><span style=\"color: blue\">'Mapping Encounter resource to VisitOccurrence OMOP Domain'</span>#xD;\n<span style=\"color: #cc00cc\">/// <b>status</b> = </span><span style=\"color: blue\">'draft'</span>#xD;\n#xD;\n<b>uses</b><span style=\"color: navy\"> \"</span><a href=\"http://hl7.org/fhir/R5/encounter.html\" title=\"Encounter\">http://hl7.org/fhir/StructureDefinition/Encounter</a><span style=\"color: navy\">\" </span><b>alias </b>Encounter <b>as </b><b>source</b>#xD;\n<b>uses</b><span style=\"color: navy\"> \"</span><a href=\"StructureDefinition-VisitOccurrence.html\" title=\"Visit Occurrence OMOP Table\">http://hl7.org/fhir/uv/omop/StructureDefinition/VisitOccurrence</a><span style=\"color: navy\">\" </span><b>alias </b>VisitTable <b>as </b><b>target</b>#xD;\n#xD;\n<b>group </b>VisitOccurrence<span style=\"color: navy\">(</span><b>source</b> <span style=\"color: maroon\">src</span><span style=\"color: navy\"> : </span>Encounter, <b>target</b> <span style=\"color: maroon\">tgt</span><span style=\"color: navy\"> : </span>VisitTable<span style=\"color: navy\">)</span><span style=\"color: navy\"> {#xD;\n</span> src.class<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> s.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> sc.code<b> as </b><span style=\"color: maroon\">a</span><span style=\"color: navy\"><b> -> </b></span> tgt.visit_concept_id = <span style=\"color: maroon\">a</span><span style=\"color: navy\">, </span> tgt.visit_source_value = <span style=\"color: maroon\">a</span><span style=\"color: navy\">, </span> tgt.visit_source_concept_id = <span style=\"color: maroon\">a</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span> <span style=\"color: navy\">// </span><span style=\"color: green\">src.id as id -> tgt.visit_occurrence_id = cast(id, \"integer\");</span>#xD;\n src.actualPeriod<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> s.start<b> as </b><span style=\"color: maroon\">std</span><span style=\"color: navy\"><b> -> </b></span> tgt.visit_start_date = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">std</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'date'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.visit_start_datetime = <span style=\"color: maroon\">std</span><span style=\"color: navy\">;</span>#xD;\n s.end<b> as </b><span style=\"color: maroon\">ed</span><span style=\"color: navy\"><b> -> </b></span> tgt.visit_end_date = <b>cast</b><span style=\"color: navy\">(</span><span style=\"color: maroon\">ed</span><span style=\"color: navy\">, </span><span style=\"color: blue\">'date'</span><span style=\"color: navy\">)</span><span style=\"color: navy\">, </span> tgt.visit_end_datetime = <span style=\"color: maroon\">ed</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n src.admission<b> as </b><span style=\"color: maroon\">s</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> s.admitSource<b> as </b><span style=\"color: maroon\">sa</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> sa.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> sc.code<b> as </b><span style=\"color: maroon\">code</span><span style=\"color: navy\"><b> -> </b></span> tgt.admitted_from_concept_id = <span style=\"color: maroon\">code</span><span style=\"color: navy\">, </span> tgt.admitted_from_source_value = <span style=\"color: maroon\">code</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n s.dischargeDisposition<b> as </b><span style=\"color: maroon\">sd</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> sd.coding<b> as </b><span style=\"color: maroon\">sc</span><span style=\"color: navy\"><b> -> </b></span><span style=\"color: maroon\">tgt</span><b> then</b><span style=\"color: navy\"> {#xD;\n</span> sc.code<b> as </b><span style=\"color: maroon\">code</span><span style=\"color: navy\"><b> -> </b></span> tgt.discharged_to_concept_id = <span style=\"color: maroon\">code</span><span style=\"color: navy\">, </span> tgt.discharged_to_source_value = <span style=\"color: maroon\">code</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n <span style=\"color: navy\">}</span><span style=\"color: navy\">;</span>#xD;\n<span style=\"color: navy\">}#xD;\n#xD;\n</span></pre></div>"^^rdf:XMLLiteral
] ; #
fhir:extension ( [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"^^xsd:anyURI ] ;
fhir:value [
a fhir:code ;
fhir:v "brr" ]
] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 1 ;
( fhir:extension [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ;
fhir:value [
a fhir:canonical ;
fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop> ] ] ) ]
] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status"^^xsd:anyURI ] ;
fhir:value [
a fhir:code ;
fhir:v "informative" ;
( fhir:extension [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ;
fhir:value [
a fhir:canonical ;
fhir:v "http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/ImplementationGuide/hl7.fhir.uv.omop> ] ] ) ]
] ) ; #
fhir:url [ fhir:v "http://hl7.org/fhir/uv/omop/StructureMap/EncounterVisitMap"^^xsd:anyURI] ; #
fhir:version [ fhir:v "1.0.0-ballot"] ; #
fhir:name [ fhir:v "EncounterVisitMap"] ; #
fhir:title [ fhir:v "Mapping Encounter resource to VisitOccurrence OMOP Domain"] ; #
fhir:status [ fhir:v "draft"] ; #
fhir:date [ fhir:v "2025-07-29T21:03:04+00:00"^^xsd:dateTime] ; #
fhir:publisher [ fhir:v "HL7 International / Biomedical Research and Regulation"] ; #
fhir:contact ( [
fhir:name [ fhir:v "HL7 International / Biomedical Research and Regulation" ] ;
( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://www.hl7.org/Special/committees/rcrim" ] ] )
] ) ; #
fhir:description [ fhir:v "This mapping maps FHIR Encounter instances to OMOP Visit Occurence Table objects."] ; #
fhir:jurisdiction ( [
( fhir:coding [
fhir:system [ fhir:v "http://unstats.un.org/unsd/methods/m49/m49.htm"^^xsd:anyURI ] ;
fhir:code [ fhir:v "001" ] ;
fhir:display [ fhir:v "World" ] ] )
] ) ; #
fhir:structure ( [
fhir:url [
fhir:v "http://hl7.org/fhir/StructureDefinition/Encounter"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/StructureDefinition/Encounter> ] ;
fhir:mode [ fhir:v "source" ] ;
fhir:alias [ fhir:v "Encounter" ]
] [
fhir:url [
fhir:v "http://hl7.org/fhir/uv/omop/StructureDefinition/VisitOccurrence"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/omop/StructureDefinition/VisitOccurrence> ] ;
fhir:mode [ fhir:v "target" ] ;
fhir:alias [ fhir:v "VisitTable" ]
] ) ; #
fhir:group ( [
fhir:name [ fhir:v "VisitOccurrence" ] ;
( fhir:input [
fhir:name [ fhir:v "src" ] ;
fhir:type [ fhir:v "Encounter" ] ;
fhir:mode [ fhir:v "source" ] ] [
fhir:name [ fhir:v "tgt" ] ;
fhir:type [ fhir:v "VisitTable" ] ;
fhir:mode [ fhir:v "target" ] ] ) ;
( fhir:rule [
fhir:name [ fhir:v "class" ] ;
( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "class" ] ;
fhir:variable [ fhir:v "s" ] ] ) ;
( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt" ] ] ) ] ) ;
( fhir:rule [
fhir:name [ fhir:v "coding" ] ;
( fhir:source [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "coding" ] ;
fhir:variable [ fhir:v "sc" ] ] ) ;
( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt" ] ] ) ] ) ;
( fhir:rule [
fhir:name [ fhir:v "code" ] ;
( fhir:source [
fhir:context [ fhir:v "sc" ] ;
fhir:element [ fhir:v "code" ] ;
fhir:variable [ fhir:v "a" ] ] ) ;
( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "visit_concept_id" ] ;
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "a" ] ] ) ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "visit_source_value" ] ;
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "a" ] ] ) ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "visit_source_concept_id" ] ;
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "a" ] ] ) ] ) ] ) ] ) ;
fhir:documentation [ fhir:v "src.id as id -> tgt.visit_occurrence_id = cast(id, \"integer\");" ] ] [
fhir:name [ fhir:v "actualPeriod" ] ;
( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "actualPeriod" ] ;
fhir:variable [ fhir:v "s" ] ] ) ;
( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt" ] ] ) ] ) ;
( fhir:rule [
fhir:name [ fhir:v "start" ] ;
( fhir:source [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "start" ] ;
fhir:variable [ fhir:v "std" ] ] ) ;
( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "visit_start_date" ] ;
fhir:transform [ fhir:v "cast" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "std" ] ] [
fhir:value [
a fhir:string ;
fhir:v "date" ] ] ) ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "visit_start_datetime" ] ;
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "std" ] ] ) ] ) ] [
fhir:name [ fhir:v "end" ] ;
( fhir:source [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "end" ] ;
fhir:variable [ fhir:v "ed" ] ] ) ;
( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "visit_end_date" ] ;
fhir:transform [ fhir:v "cast" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "ed" ] ] [
fhir:value [
a fhir:string ;
fhir:v "date" ] ] ) ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "visit_end_datetime" ] ;
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "ed" ] ] ) ] ) ] ) ] [
fhir:name [ fhir:v "admission" ] ;
( fhir:source [
fhir:context [ fhir:v "src" ] ;
fhir:element [ fhir:v "admission" ] ;
fhir:variable [ fhir:v "s" ] ] ) ;
( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt" ] ] ) ] ) ;
( fhir:rule [
fhir:name [ fhir:v "admitSource" ] ;
( fhir:source [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "admitSource" ] ;
fhir:variable [ fhir:v "sa" ] ] ) ;
( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt" ] ] ) ] ) ;
( fhir:rule [
fhir:name [ fhir:v "coding" ] ;
( fhir:source [
fhir:context [ fhir:v "sa" ] ;
fhir:element [ fhir:v "coding" ] ;
fhir:variable [ fhir:v "sc" ] ] ) ;
( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt" ] ] ) ] ) ;
( fhir:rule [
fhir:name [ fhir:v "code" ] ;
( fhir:source [
fhir:context [ fhir:v "sc" ] ;
fhir:element [ fhir:v "code" ] ;
fhir:variable [ fhir:v "code" ] ] ) ;
( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "admitted_from_concept_id" ] ;
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "code" ] ] ) ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "admitted_from_source_value" ] ;
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "code" ] ] ) ] ) ] ) ] ) ] [
fhir:name [ fhir:v "dischargeDisposition" ] ;
( fhir:source [
fhir:context [ fhir:v "s" ] ;
fhir:element [ fhir:v "dischargeDisposition" ] ;
fhir:variable [ fhir:v "sd" ] ] ) ;
( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt" ] ] ) ] ) ;
( fhir:rule [
fhir:name [ fhir:v "coding" ] ;
( fhir:source [
fhir:context [ fhir:v "sd" ] ;
fhir:element [ fhir:v "coding" ] ;
fhir:variable [ fhir:v "sc" ] ] ) ;
( fhir:target [
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "tgt" ] ] ) ] ) ;
( fhir:rule [
fhir:name [ fhir:v "code" ] ;
( fhir:source [
fhir:context [ fhir:v "sc" ] ;
fhir:element [ fhir:v "code" ] ;
fhir:variable [ fhir:v "code" ] ] ) ;
( fhir:target [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "discharged_to_concept_id" ] ;
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "code" ] ] ) ] [
fhir:context [ fhir:v "tgt" ] ;
fhir:element [ fhir:v "discharged_to_source_value" ] ;
fhir:transform [ fhir:v "copy" ] ;
( fhir:parameter [
fhir:value [
a fhir:id ;
fhir:v "code" ] ] ) ] ) ] ) ] ) ] ) ] )
] ) . #
IG © 2023+ HL7 International / Biomedical Research and Regulation. Package hl7.fhir.uv.omop#1.0.0-ballot based on FHIR 5.0.0. Generated 2025-07-29
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