Genomics Reporting Implementation Guide
3.0.0-ballot - Ballot International flag

This page is part of the Genetic Reporting Implementation Guide (v3.0.0-ballot: STU 3 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. The current version which supersedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

: genomicFileProbandBAM - XML Representation

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<DocumentReference xmlns="http://hl7.org/fhir">
  <id value="genomicFileProbandBAM"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative: DocumentReference</b><a name="genomicFileProbandBAM"> </a></p><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource DocumentReference &quot;genomicFileProbandBAM&quot; </p><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-genomic-data-file.html">Genomic Data File</a></p></div><p><b>identifier</b>: id: 11118</p><p><b>status</b>: current</p><p><b>docStatus</b>: preliminary</p><p><b>subject</b>: <a href="Patient-denovoChild.html">Patient/denovoChild</a> &quot; DENOVO&quot;</p><p><b>description</b>: A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: Restricted <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.3.0/CodeSystem-v3-Confidentiality.html">Confidentiality</a>#R)</span></p><blockquote><p><b>content</b></p><h3>Attachments</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Url</b></td><td><b>Title</b></td></tr><tr><td style="display: none">*</td><td><a href="http://www.somesystemabc.net/identifiers/files/11111">http://www.somesystemabc.net/identifiers/files/11111</a></td><td>Probands BAM file</td></tr></table></blockquote></div>
  </text>
  <identifier>
    <system value="http://www.somesystemabc.net/identifiers/files"/>
    <value value="11118"/>
  </identifier>
  <status value="current"/>
  <docStatus value="preliminary"/>
  <subject>🔗 
    <reference value="Patient/denovoChild"/>
  </subject>
  <description
               value="A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline."/>
  <securityLabel>
    <coding>
      <system
              value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
      <code value="R"/>
      <display value="Restricted"/>
    </coding>
  </securityLabel>
  <content>
    <attachment>
      <url value="http://www.somesystemabc.net/identifiers/files/11111"/>
      <title value="Probands BAM file"/>
    </attachment>
  </content>
</DocumentReference>