Genomics Reporting Implementation Guide
3.0.0-ballot - Ballot International flag

This page is part of the Genetic Reporting Implementation Guide (v3.0.0-ballot: STU 3 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. The current version which supersedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

: genomicFileProbandBAM - JSON Representation

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{
  "resourceType" : "DocumentReference",
  "id" : "genomicFileProbandBAM",
  "meta" : {
    "profile" : [
      🔗 "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: DocumentReference</b><a name=\"genomicFileProbandBAM\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource DocumentReference &quot;genomicFileProbandBAM&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genomic-data-file.html\">Genomic Data File</a></p></div><p><b>identifier</b>: id:\u00a011118</p><p><b>status</b>: current</p><p><b>docStatus</b>: preliminary</p><p><b>subject</b>: <a href=\"Patient-denovoChild.html\">Patient/denovoChild</a> &quot; DENOVO&quot;</p><p><b>description</b>: A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: Restricted <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v3-Confidentiality.html\">Confidentiality</a>#R)</span></p><blockquote><p><b>content</b></p><h3>Attachments</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Url</b></td><td><b>Title</b></td></tr><tr><td style=\"display: none\">*</td><td><a href=\"http://www.somesystemabc.net/identifiers/files/11111\">http://www.somesystemabc.net/identifiers/files/11111</a></td><td>Probands BAM file</td></tr></table></blockquote></div>"
  },
  "identifier" : [
    {
      "system" : "http://www.somesystemabc.net/identifiers/files",
      "value" : "11118"
    }
  ],
  "status" : "current",
  "docStatus" : "preliminary",
  "subject" : {
    🔗 "reference" : "Patient/denovoChild"
  },
  "description" : "A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.",
  "securityLabel" : [
    {
      "coding" : [
        {
          "system" : "http://terminology.hl7.org/CodeSystem/v3-Confidentiality",
          "code" : "R",
          "display" : "Restricted"
        }
      ]
    }
  ],
  "content" : [
    {
      "attachment" : {
        "url" : "http://www.somesystemabc.net/identifiers/files/11111",
        "title" : "Probands BAM file"
      }
    }
  ]
}