This page is part of the Genetic Reporting Implementation Guide (v3.0.0-ballot: STU 3 Ballot 1) based on FHIR (HL7® FHIR® Standard) R4. The current version which supersedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions
: ClinVar Evidence Level Example Codes - XML Representation
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<CodeSystem xmlns="http://hl7.org/fhir">
<id value="clinvar-evidence-level-custom-cs"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p>This case-sensitive code system <code>http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/clinvar-evidence-level-custom-cs</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style="white-space:nowrap">4-star<a name="clinvar-evidence-level-custom-cs-4-star"> </a></td><td>4 star</td><td>Supported by practice guideline</td></tr><tr><td style="white-space:nowrap">3-star<a name="clinvar-evidence-level-custom-cs-3-star"> </a></td><td>3 star</td><td>Supported by expert panel review</td></tr><tr><td style="white-space:nowrap">2-star<a name="clinvar-evidence-level-custom-cs-2-star"> </a></td><td>2 star</td><td>Supported by submission by multiple-submitters with documentation of criteria for assertion</td></tr><tr><td style="white-space:nowrap">1-star<a name="clinvar-evidence-level-custom-cs-1-star"> </a></td><td>1 star</td><td>Single submitter providing interpretation and documentation of criteria for assertion</td></tr><tr><td style="white-space:nowrap">no-star<a name="clinvar-evidence-level-custom-cs-no-star"> </a></td><td>no star</td><td>submitted, no evidence</td></tr></table></div>
</text>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
<valueCode value="cg"/>
</extension>
<url
value="http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/clinvar-evidence-level-custom-cs"/>
<version value="3.0.0-ballot"/>
<name value="ClinVarEvidenceLevelCustomCS"/>
<title value="ClinVar Evidence Level Example Codes"/>
<status value="active"/>
<experimental value="false"/>
<date value="2023-12-18T22:45:59+00:00"/>
<publisher value="HL7 International / Clinical Genomics"/>
<contact>
<name value="HL7 International / Clinical Genomics"/>
<telecom>
<system value="url"/>
<value value="http://www.hl7.org/Special/committees/clingenomics"/>
</telecom>
<telecom>
<system value="email"/>
<value value="cg@lists.HL7.org"/>
</telecom>
</contact>
<description
value="ClinVar contains examples of evidence level concepts that are not conflated with clinical significance. These can be found on ClinVar https://www.ncbi.nlm.nih.gov/clinvar/docs/review_status/ . These examples are informational only, for copyright information contact the relevant source."/>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
<display value="World"/>
</coding>
</jurisdiction>
<caseSensitive value="true"/>
<content value="complete"/>
<count value="5"/>
<concept>
<code value="4-star"/>
<display value="4 star"/>
<definition value="Supported by practice guideline"/>
</concept>
<concept>
<code value="3-star"/>
<display value="3 star"/>
<definition value="Supported by expert panel review"/>
</concept>
<concept>
<code value="2-star"/>
<display value="2 star"/>
<definition
value="Supported by submission by multiple-submitters with documentation of criteria for assertion"/>
</concept>
<concept>
<code value="1-star"/>
<display value="1 star"/>
<definition
value="Single submitter providing interpretation and documentation of criteria for assertion"/>
</concept>
<concept>
<code value="no-star"/>
<display value="no star"/>
<definition value="submitted, no evidence"/>
</concept>
</CodeSystem>
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