minimal Common Oncology Data Elements (mCODE) Implementation Guide
2.0.0 - STU 2
minimal Common Oncology Data Elements (mCODE) Implementation Guide
2.0.0 - STU 2
This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v2.0.0: STU 2) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions 
@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
a fhir:ValueSet;
fhir:nodeRole fhir:treeRoot;
fhir:Resource.id [ fhir:value "mcode-genomic-specimen-type-vs"];
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "extensions" ];
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><ul><li>Include these codes as defined in <a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html\"><code>http://terminology.hl7.org/CodeSystem/v2-0487</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-AMN\">AMN</a></td><td>Amniotic fluid</td><td>Amniotic fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BIFL\">BIFL</a></td><td>Bile Fluid</td><td>Bile Fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BLD\">BLD</a></td><td>Whole blood</td><td>Whole blood</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BLDA\">BLDA</a></td><td>Blood arterial</td><td>Blood arterial</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BLDCO\">BLDCO</a></td><td>Cord blood</td><td>Cord blood</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BLDV\">BLDV</a></td><td>Blood venous</td><td>Blood venous</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BON\">BON</a></td><td>Bone</td><td>Bone</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-CSERU\">CSERU</a></td><td>Serum, Convalescent</td><td>Serum, Convalescent</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-CSF\">CSF</a></td><td>Cerebral spinal fluid</td><td>Cerebral spinal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-CVM\">CVM</a></td><td>Cervical Mucus</td><td>Cervical Mucus</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-DUFL\">DUFL</a></td><td>Duodenal fluid</td><td>Duodenal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-FBLOOD\">FBLOOD</a></td><td>Blood, Fetal</td><td>Blood, Fetal</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-FGA\">FGA</a></td><td>Fluid, Abdomen</td><td>Fluid, Abdomen</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-GENV\">GENV</a></td><td>Genital vaginal</td><td>Genital vaginal</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-HYDC\">HYDC</a></td><td>Fluid, Hydrocele</td><td>Fluid, Hydrocele</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-JNTFLD\">JNTFLD</a></td><td>Fluid, Joint</td><td>Fluid, Joint</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-KIDFLD\">KIDFLD</a></td><td>Fluid, Kidney</td><td>Fluid, Kidney</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-LSAC\">LSAC</a></td><td>Fluid, Lumbar Sac</td><td>Fluid, Lumbar Sac</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-MAR\">MAR</a></td><td>Marrow</td><td>Marrow</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-PAFL\">PAFL</a></td><td>Pancreatic fluid</td><td>Pancreatic fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-PCFL\">PCFL</a></td><td>Fluid, Pericardial</td><td>Fluid, Pericardial</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-PLC\">PLC</a></td><td>Placenta</td><td>Placenta</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-PLR\">PLR</a></td><td>Pleural fluid (thoracentesis fluid)</td><td>Pleural fluid (thoracentesis fluid)</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-SAL\">SAL</a></td><td>Saliva</td><td>Saliva</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-SKN\">SKN</a></td><td>Skin</td><td>Skin</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-SMN\">SMN</a></td><td>Seminal fluid</td><td>Seminal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-SNV\">SNV</a></td><td>Fluid, synovial (Joint fluid)</td><td>Fluid, synovial (Joint fluid)</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-SPT\">SPT</a></td><td>Sputum</td><td>Sputum</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-TISS\">TISS</a></td><td>Tissue</td><td>Tissue</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-TUMOR\">TUMOR</a></td><td>Tumor</td><td>Tumor</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-VITF\">VITF</a></td><td>Vitreous Fluid</td><td>Vitreous Fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-WND\">WND</a></td><td>Wound</td><td>Wound</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-UR\">UR</a></td><td>Urine</td><td>Urine</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-STL\">STL</a></td><td>Stool = Fecal</td><td>Stool = Fecal</td></tr></table></li></ul></div>"
];
fhir:ValueSet.url [ fhir:value "http://hl7.org/fhir/us/mcode/ValueSet/mcode-genomic-specimen-type-vs"];
fhir:ValueSet.version [ fhir:value "2.0.0"];
fhir:ValueSet.name [ fhir:value "GenomicSpecimenTypeVS"];
fhir:ValueSet.title [ fhir:value "Genomic Specimen Type Value Set"];
fhir:ValueSet.status [ fhir:value "active"];
fhir:ValueSet.date [ fhir:value "2022-01-18T03:17:40+00:00"^^xsd:dateTime];
fhir:ValueSet.publisher [ fhir:value "HL7 International Clinical Interoperability Council"];
fhir:ValueSet.contact [
fhir:index 0;
fhir:ContactDetail.name [ fhir:value "HL7 International Clinical Interoperability Council" ];
fhir:ContactDetail.telecom [
fhir:index 0;
fhir:ContactPoint.system [ fhir:value "url" ];
fhir:ContactPoint.value [ fhir:value "http://www.hl7.org/Special/committees/cic" ] ], [
fhir:index 1;
fhir:ContactPoint.system [ fhir:value "email" ];
fhir:ContactPoint.value [ fhir:value "ciclist@lists.HL7.org" ] ]
];
fhir:ValueSet.description [ fhir:value "The type of specimen analyzed in a genomic test. The values include the subset of codes in the HL7 Specimen Type code system (https://terminology.hl7.org/2.1.0/CodeSystem-v2-0487.html) representing body sites and body fluids likely to be used in genomic testing. The most specific term available should be used."];
fhir:ValueSet.jurisdiction [
fhir:index 0;
fhir:CodeableConcept.coding [
fhir:index 0;
fhir:Coding.system [ fhir:value "urn:iso:std:iso:3166" ];
fhir:Coding.code [ fhir:value "US" ];
fhir:Coding.display [ fhir:value "United States of America" ] ]
];
fhir:ValueSet.compose [
fhir:ValueSet.compose.include [
fhir:index 0;
fhir:ValueSet.compose.include.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0487" ];
fhir:ValueSet.compose.include.concept [
fhir:index 0;
fhir:ValueSet.compose.include.concept.code [ fhir:value "AMN" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Amniotic fluid" ] ], [
fhir:index 1;
fhir:ValueSet.compose.include.concept.code [ fhir:value "BIFL" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Bile Fluid" ] ], [
fhir:index 2;
fhir:ValueSet.compose.include.concept.code [ fhir:value "BLD" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Whole blood" ] ], [
fhir:index 3;
fhir:ValueSet.compose.include.concept.code [ fhir:value "BLDA" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Blood arterial" ] ], [
fhir:index 4;
fhir:ValueSet.compose.include.concept.code [ fhir:value "BLDCO" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Cord blood" ] ], [
fhir:index 5;
fhir:ValueSet.compose.include.concept.code [ fhir:value "BLDV" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Blood venous" ] ], [
fhir:index 6;
fhir:ValueSet.compose.include.concept.code [ fhir:value "BON" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Bone" ] ], [
fhir:index 7;
fhir:ValueSet.compose.include.concept.code [ fhir:value "CSERU" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Serum, Convalescent" ] ], [
fhir:index 8;
fhir:ValueSet.compose.include.concept.code [ fhir:value "CSF" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Cerebral spinal fluid" ] ], [
fhir:index 9;
fhir:ValueSet.compose.include.concept.code [ fhir:value "CVM" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Cervical Mucus" ] ], [
fhir:index 10;
fhir:ValueSet.compose.include.concept.code [ fhir:value "DUFL" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Duodenal fluid" ] ], [
fhir:index 11;
fhir:ValueSet.compose.include.concept.code [ fhir:value "FBLOOD" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Blood, Fetal" ] ], [
fhir:index 12;
fhir:ValueSet.compose.include.concept.code [ fhir:value "FGA" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Fluid, Abdomen" ] ], [
fhir:index 13;
fhir:ValueSet.compose.include.concept.code [ fhir:value "GENV" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Genital vaginal" ] ], [
fhir:index 14;
fhir:ValueSet.compose.include.concept.code [ fhir:value "HYDC" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Fluid, Hydrocele" ] ], [
fhir:index 15;
fhir:ValueSet.compose.include.concept.code [ fhir:value "JNTFLD" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Fluid, Joint" ] ], [
fhir:index 16;
fhir:ValueSet.compose.include.concept.code [ fhir:value "KIDFLD" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Fluid, Kidney" ] ], [
fhir:index 17;
fhir:ValueSet.compose.include.concept.code [ fhir:value "LSAC" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Fluid, Lumbar Sac" ] ], [
fhir:index 18;
fhir:ValueSet.compose.include.concept.code [ fhir:value "MAR" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Marrow" ] ], [
fhir:index 19;
fhir:ValueSet.compose.include.concept.code [ fhir:value "PAFL" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Pancreatic fluid" ] ], [
fhir:index 20;
fhir:ValueSet.compose.include.concept.code [ fhir:value "PCFL" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Fluid, Pericardial" ] ], [
fhir:index 21;
fhir:ValueSet.compose.include.concept.code [ fhir:value "PLC" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Placenta" ] ], [
fhir:index 22;
fhir:ValueSet.compose.include.concept.code [ fhir:value "PLR" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Pleural fluid (thoracentesis fluid)" ] ], [
fhir:index 23;
fhir:ValueSet.compose.include.concept.code [ fhir:value "SAL" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Saliva" ] ], [
fhir:index 24;
fhir:ValueSet.compose.include.concept.code [ fhir:value "SKN" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Skin" ] ], [
fhir:index 25;
fhir:ValueSet.compose.include.concept.code [ fhir:value "SMN" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Seminal fluid" ] ], [
fhir:index 26;
fhir:ValueSet.compose.include.concept.code [ fhir:value "SNV" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Fluid, synovial (Joint fluid)" ] ], [
fhir:index 27;
fhir:ValueSet.compose.include.concept.code [ fhir:value "SPT" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Sputum" ] ], [
fhir:index 28;
fhir:ValueSet.compose.include.concept.code [ fhir:value "TISS" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Tissue" ] ], [
fhir:index 29;
fhir:ValueSet.compose.include.concept.code [ fhir:value "TUMOR" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Tumor" ] ], [
fhir:index 30;
fhir:ValueSet.compose.include.concept.code [ fhir:value "VITF" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Vitreous Fluid" ] ], [
fhir:index 31;
fhir:ValueSet.compose.include.concept.code [ fhir:value "WND" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Wound" ] ], [
fhir:index 32;
fhir:ValueSet.compose.include.concept.code [ fhir:value "UR" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Urine" ] ], [
fhir:index 33;
fhir:ValueSet.compose.include.concept.code [ fhir:value "STL" ];
fhir:ValueSet.compose.include.concept.display [ fhir:value "Stool = Fecal" ] ] ]
].
# - ontology header ------------------------------------------------------------
a owl:Ontology;
owl:imports fhir:fhir.ttl.
IG © 2019+ HL7 International Clinical Interoperability Council. Package hl7.fhir.us.mcode#2.0.0 based on FHIR 4.0.1. Generated 2022-01-18
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