minimal Common Oncology Data Elements (mCODE) Implementation Guide
2.0.0 - STU 2
minimal Common Oncology Data Elements (mCODE) Implementation Guide
2.0.0 - STU 2
This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v2.0.0: STU 2) based on FHIR R4. This is the current published version in its permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions 
{
"resourceType" : "ValueSet",
"id" : "mcode-genomic-specimen-type-vs",
"text" : {
"status" : "extensions",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><ul><li>Include these codes as defined in <a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html\"><code>http://terminology.hl7.org/CodeSystem/v2-0487</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-AMN\">AMN</a></td><td>Amniotic fluid</td><td>Amniotic fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BIFL\">BIFL</a></td><td>Bile Fluid</td><td>Bile Fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BLD\">BLD</a></td><td>Whole blood</td><td>Whole blood</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BLDA\">BLDA</a></td><td>Blood arterial</td><td>Blood arterial</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BLDCO\">BLDCO</a></td><td>Cord blood</td><td>Cord blood</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BLDV\">BLDV</a></td><td>Blood venous</td><td>Blood venous</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-BON\">BON</a></td><td>Bone</td><td>Bone</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-CSERU\">CSERU</a></td><td>Serum, Convalescent</td><td>Serum, Convalescent</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-CSF\">CSF</a></td><td>Cerebral spinal fluid</td><td>Cerebral spinal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-CVM\">CVM</a></td><td>Cervical Mucus</td><td>Cervical Mucus</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-DUFL\">DUFL</a></td><td>Duodenal fluid</td><td>Duodenal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-FBLOOD\">FBLOOD</a></td><td>Blood, Fetal</td><td>Blood, Fetal</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-FGA\">FGA</a></td><td>Fluid, Abdomen</td><td>Fluid, Abdomen</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-GENV\">GENV</a></td><td>Genital vaginal</td><td>Genital vaginal</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-HYDC\">HYDC</a></td><td>Fluid, Hydrocele</td><td>Fluid, Hydrocele</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-JNTFLD\">JNTFLD</a></td><td>Fluid, Joint</td><td>Fluid, Joint</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-KIDFLD\">KIDFLD</a></td><td>Fluid, Kidney</td><td>Fluid, Kidney</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-LSAC\">LSAC</a></td><td>Fluid, Lumbar Sac</td><td>Fluid, Lumbar Sac</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-MAR\">MAR</a></td><td>Marrow</td><td>Marrow</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-PAFL\">PAFL</a></td><td>Pancreatic fluid</td><td>Pancreatic fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-PCFL\">PCFL</a></td><td>Fluid, Pericardial</td><td>Fluid, Pericardial</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-PLC\">PLC</a></td><td>Placenta</td><td>Placenta</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-PLR\">PLR</a></td><td>Pleural fluid (thoracentesis fluid)</td><td>Pleural fluid (thoracentesis fluid)</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-SAL\">SAL</a></td><td>Saliva</td><td>Saliva</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-SKN\">SKN</a></td><td>Skin</td><td>Skin</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-SMN\">SMN</a></td><td>Seminal fluid</td><td>Seminal fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-SNV\">SNV</a></td><td>Fluid, synovial (Joint fluid)</td><td>Fluid, synovial (Joint fluid)</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-SPT\">SPT</a></td><td>Sputum</td><td>Sputum</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-TISS\">TISS</a></td><td>Tissue</td><td>Tissue</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-TUMOR\">TUMOR</a></td><td>Tumor</td><td>Tumor</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-VITF\">VITF</a></td><td>Vitreous Fluid</td><td>Vitreous Fluid</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-WND\">WND</a></td><td>Wound</td><td>Wound</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-UR\">UR</a></td><td>Urine</td><td>Urine</td></tr><tr><td><a href=\"http://terminology.hl7.org/3.0.0/CodeSystem-v2-0487.html#v2-0487-STL\">STL</a></td><td>Stool = Fecal</td><td>Stool = Fecal</td></tr></table></li></ul></div>"
},
"url" : "http://hl7.org/fhir/us/mcode/ValueSet/mcode-genomic-specimen-type-vs",
"version" : "2.0.0",
"name" : "GenomicSpecimenTypeVS",
"title" : "Genomic Specimen Type Value Set",
"status" : "active",
"date" : "2022-01-18T03:17:40+00:00",
"publisher" : "HL7 International Clinical Interoperability Council",
"contact" : [
{
"name" : "HL7 International Clinical Interoperability Council",
"telecom" : [
{
"system" : "url",
"value" : "http://www.hl7.org/Special/committees/cic"
},
{
"system" : "email",
"value" : "ciclist@lists.HL7.org"
}
]
}
],
"description" : "The type of specimen analyzed in a genomic test. The values include the subset of codes in the HL7 Specimen Type code system (https://terminology.hl7.org/2.1.0/CodeSystem-v2-0487.html) representing body sites and body fluids likely to be used in genomic testing. The most specific term available should be used.",
"jurisdiction" : [
{
"coding" : [
{
"system" : "urn:iso:std:iso:3166",
"code" : "US",
"display" : "United States of America"
}
]
}
],
"compose" : {
"include" : [
{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0487",
"concept" : [
{
"code" : "AMN",
"display" : "Amniotic fluid"
},
{
"code" : "BIFL",
"display" : "Bile Fluid"
},
{
"code" : "BLD",
"display" : "Whole blood"
},
{
"code" : "BLDA",
"display" : "Blood arterial"
},
{
"code" : "BLDCO",
"display" : "Cord blood"
},
{
"code" : "BLDV",
"display" : "Blood venous"
},
{
"code" : "BON",
"display" : "Bone"
},
{
"code" : "CSERU",
"display" : "Serum, Convalescent"
},
{
"code" : "CSF",
"display" : "Cerebral spinal fluid"
},
{
"code" : "CVM",
"display" : "Cervical Mucus"
},
{
"code" : "DUFL",
"display" : "Duodenal fluid"
},
{
"code" : "FBLOOD",
"display" : "Blood, Fetal"
},
{
"code" : "FGA",
"display" : "Fluid, Abdomen"
},
{
"code" : "GENV",
"display" : "Genital vaginal"
},
{
"code" : "HYDC",
"display" : "Fluid, Hydrocele"
},
{
"code" : "JNTFLD",
"display" : "Fluid, Joint"
},
{
"code" : "KIDFLD",
"display" : "Fluid, Kidney"
},
{
"code" : "LSAC",
"display" : "Fluid, Lumbar Sac"
},
{
"code" : "MAR",
"display" : "Marrow"
},
{
"code" : "PAFL",
"display" : "Pancreatic fluid"
},
{
"code" : "PCFL",
"display" : "Fluid, Pericardial"
},
{
"code" : "PLC",
"display" : "Placenta"
},
{
"code" : "PLR",
"display" : "Pleural fluid (thoracentesis fluid)"
},
{
"code" : "SAL",
"display" : "Saliva"
},
{
"code" : "SKN",
"display" : "Skin"
},
{
"code" : "SMN",
"display" : "Seminal fluid"
},
{
"code" : "SNV",
"display" : "Fluid, synovial (Joint fluid)"
},
{
"code" : "SPT",
"display" : "Sputum"
},
{
"code" : "TISS",
"display" : "Tissue"
},
{
"code" : "TUMOR",
"display" : "Tumor"
},
{
"code" : "VITF",
"display" : "Vitreous Fluid"
},
{
"code" : "WND",
"display" : "Wound"
},
{
"code" : "UR",
"display" : "Urine"
},
{
"code" : "STL",
"display" : "Stool = Fecal"
}
]
}
]
}
}
IG © 2019+ HL7 International Clinical Interoperability Council. Package hl7.fhir.us.mcode#2.0.0 based on FHIR 4.0.1. Generated 2022-01-18
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