HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU Ballot 1

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v0.9.1: STU 1 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

TumorMarkerTestVS

@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ValueSet;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "onco-core-TumorMarkerTestVS"];
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n<p><b>TumorMarkerTestVS ValueSet</b></p>\n<p>Codes representing tests for tumor markers. This value set of LOINC codes is not comprehensive and can be extended. LOINC codes are preferred. Other vocabularies can be used only if the test of interest is not covered by LOINC.\n\nFHIR implementation note: At the current time, profiles for the specific LOINC tests mentioned here do not exist.</p>\n</div>"
  ];
  fhir:ValueSet.url [ fhir:value "http://hl7.org/fhir/us/mcode/ValueSet/onco-core-TumorMarkerTestVS"];
  fhir:ValueSet.version [ fhir:value "0.9.1"];
  fhir:ValueSet.name [ fhir:value "TumorMarkerTestVS"];
  fhir:ValueSet.title [ fhir:value "TumorMarkerTestVS"];
  fhir:ValueSet.status [ fhir:value "draft"];
  fhir:ValueSet.date [ fhir:value "2019-08-01T00:00:00-04:00"^^xsd:dateTime];
  fhir:ValueSet.publisher [ fhir:value "HL7 International Clinical Interoperability Council"];
  fhir:ValueSet.contact [
     fhir:index 0;
     fhir:ContactDetail.telecom [
       fhir:index 0;
       fhir:ContactPoint.system [ fhir:value "url" ];
       fhir:ContactPoint.value [ fhir:value "http://www.hl7.org/Special/committees/cic" ]     ]
  ];
  fhir:ValueSet.description [ fhir:value "Codes representing tests for tumor markers. This value set of LOINC codes is not comprehensive and can be extended. LOINC codes are preferred. Other vocabularies can be used only if the test of interest is not covered by LOINC.\n\nFHIR implementation note: At the current time, profiles for the specific LOINC tests mentioned here do not exist."];
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         fhir:index 1;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "31203-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "5-Hydroxyindoleacetate [Mass/volume] in 24 hour Urine" ]       ], [
         fhir:index 2;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "1692-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "5-Hydroxyindoleacetate [Mass/volume] in Cerebral spinal fluid" ]       ], [
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "1693-1" ];
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         fhir:ValueSet.compose.include.concept.display [ fhir:value "5-Hydroxyindoleacetate [Mass/volume] in Urine by Confirmatory method" ]       ], [
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "83079-4" ];
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         fhir:ValueSet.compose.include.concept.display [ fhir:value "Beta-2-Microglobulin amyloid Ag [Presence] in Tissue by Immune stain" ]       ], [
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "54355-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Beta-2-Microglobulin in CSF/Beta-2-Microglobulin in serum" ]       ], [
         fhir:index 65;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "56786-7" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Beta-2-Microglobulin.tumor marker [Mass/volume] in Serum" ]       ], [
         fhir:index 66;
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "48677-9" ];
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "2007-3" ];
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "29153-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 15-3 [Units/volume] in Body fluid" ]       ], [
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "50776-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 15-3 [Units/volume] in Cerebral spinal fluid" ]       ], [
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "50777-2" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 15-3 [Units/volume] in Pericardial fluid" ]       ], [
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "50778-0" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 15-3 [Units/volume] in Peritoneal fluid" ]       ], [
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "19186-6" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 15-3 [Units/volume] in Pleural fluid" ]       ], [
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         fhir:ValueSet.compose.include.concept.code [ fhir:value "6875-9" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 15-3 [Units/volume] in Serum or Plasma" ]       ], [
         fhir:index 85;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "83083-6" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 15-3 [Units/volume] in Serum or Plasma by Immunoassay" ]       ], [
         fhir:index 86;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "2009-9" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 19-9 [Presence] in Serum or Plasma" ]       ], [
         fhir:index 87;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "26924-1" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 19-9 [Units/volume] in Body fluid" ]       ], [
         fhir:index 88;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "50779-8" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 19-9 [Units/volume] in Cerebral spinal fluid" ]       ], [
         fhir:index 89;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "50780-6" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 19-9 [Units/volume] in Pericardial fluid" ]       ], [
         fhir:index 90;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "50781-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 19-9 [Units/volume] in Peritoneal fluid" ]       ], [
         fhir:index 91;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19163-5" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 19-9 [Units/volume] in Pleural fluid" ]       ], [
         fhir:index 92;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "24108-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 19-9 [Units/volume] in Serum or Plasma" ]       ], [
         fhir:index 93;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "83084-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 19-9 [Units/volume] in Serum or Plasma by Immunoassay" ]       ], [
         fhir:index 94;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "2012-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 27-29 [Presence] in Serum or Plasma" ]       ], [
         fhir:index 95;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "50782-2" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 27-29 [Units/volume] in Cerebral spinal fluid" ]       ], [
         fhir:index 96;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19187-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 27-29 [Units/volume] in Pleural fluid" ]       ], [
         fhir:index 97;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "17842-6" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cancer Ag 27-29 [Units/volume] in Serum or Plasma" ]       ], [
         fhir:index 98;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "12515-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Mass/volume] in Body fluid" ]       ], [
         fhir:index 99;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "2037-0" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Mass/volume] in Cerebral spinal fluid" ]       ], [
         fhir:index 100;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "40621-5" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Mass/volume] in Pericardial fluid" ]       ], [
         fhir:index 101;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "40622-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Mass/volume] in Peritoneal fluid" ]       ], [
         fhir:index 102;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19169-2" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Mass/volume] in Pleural fluid" ]       ], [
         fhir:index 103;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "2038-8" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Mass/volume] in Semen" ]       ], [
         fhir:index 104;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "2039-6" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Mass/volume] in Serum or Plasma" ]       ], [
         fhir:index 105;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "83085-1" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Mass/volume] in Serum or Plasma by Immunoassay" ]       ], [
         fhir:index 106;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19170-0" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Moles/volume] in Pleural fluid" ]       ], [
         fhir:index 107;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19167-6" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Moles/volume] in Serum or Plasma" ]       ], [
         fhir:index 108;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "10469-5" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Presence] in Tissue by Immune stain" ]       ], [
         fhir:index 109;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19168-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Units/volume] in Pleural fluid" ]       ], [
         fhir:index 110;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "10560-1" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Units/volume] in Semen" ]       ], [
         fhir:index 111;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19166-8" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Carcinoembryonic Ag [Units/volume] in Serum or Plasma" ]       ], [
         fhir:index 112;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "85337-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Estrogen receptor Ag [Presence] in Breast cancer specimen by Immune stain" ]       ], [
         fhir:index 113;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "40556-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Estrogen receptor Ag [Presence] in Tissue by Immune stain" ]       ], [
         fhir:index 114;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "16112-5" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Estrogen receptor [Interpretation] in Tissue" ]       ], [
         fhir:index 115;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "14130-9" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Estrogen receptor [Moles/mass] in Tissue" ]       ], [
         fhir:index 116;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "85310-1" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Estrogen receptor fluorescence intensity [Type] in Breast cancer specimen by Immune stain" ]       ], [
         fhir:index 117;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "10480-2" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Estrogen+Progesterone receptor Ag [Presence] in Tissue by Immune stain" ]       ], [
         fhir:index 118;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "83054-7" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "PD-L1 by clone 22C3 [Interpretation] in Tissue by Immune stain Narrative" ]       ], [
         fhir:index 119;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "83052-1" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "PD-L1 by clone 22C3 [Presence] in Tissue by Immune stain" ]       ], [
         fhir:index 120;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "83056-2" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "PD-L1 by clone 28-8 [Interpretation] in Tissue by Immune stain Narrative" ]       ], [
         fhir:index 121;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "83055-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "PD-L1 by clone 28-8 [Presence] in Tissue by Immune stain" ]       ], [
         fhir:index 122;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "83057-0" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "PD-L1 by clone SP142 [Presence] in Tissue by Immune stain" ]       ], [
         fhir:index 123;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "83053-9" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Cells.programmed cell death ligand 1/100 viable tumor cells in Tissue by Immune stain. (source: LOINC)" ]       ], [
         fhir:index 124;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "85339-0" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Progesterone receptor Ag [Presence] in Breast cancer specimen by Immune stain" ]       ], [
         fhir:index 125;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "40557-1" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Progesterone receptor Ag [Presence] in Tissue by Immune stain" ]       ], [
         fhir:index 126;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "16113-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Progesterone receptor [Interpretation] in Tissue" ]       ], [
         fhir:index 127;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "10861-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Progesterone receptor [Mass/mass] in Tissue" ]       ], [
         fhir:index 128;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "31207-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Progesterone receptor [Moles/mass] in Tissue" ]       ], [
         fhir:index 129;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "85331-7" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Progesterone receptor fluorescence intensity [Type] in Breast cancer specimen by Immune stain" ]       ], [
         fhir:index 130;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "47738-0" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Mass/volume] in Body fluid" ]       ], [
         fhir:index 131;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "59230-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Mass/volume] in Cerebral spinal fluid" ]       ], [
         fhir:index 132;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "59223-8" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Mass/volume] in Peritoneal fluid" ]       ], [
         fhir:index 133;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "59221-2" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Mass/volume] in Pleural fluid" ]       ], [
         fhir:index 134;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19199-9" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Mass/volume] in Semen" ]       ], [
         fhir:index 135;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "2857-1" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Mass/volume] in Serum or Plasma" ]       ], [
         fhir:index 136;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "35741-8" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Mass/volume] in Serum or Plasma by Detection limit <= 0.01 ng/mL" ]       ], [
         fhir:index 137;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "83112-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Mass/volume] in Serum or Plasma by Immunoassay" ]       ], [
         fhir:index 138;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "34611-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Mass/volume] in Urine" ]       ], [
         fhir:index 139;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19200-5" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Moles/volume] in Semen" ]       ], [
         fhir:index 140;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19197-3" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Moles/volume] in Serum or Plasma" ]       ], [
         fhir:index 141;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "10508-0" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Presence] in Tissue by Immune stain" ]       ], [
         fhir:index 142;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19198-1" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Units/volume] in Semen" ]       ], [
         fhir:index 143;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "19195-7" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag [Units/volume] in Serum or Plasma" ]       ], [
         fhir:index 144;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "15325-4" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag/Prostate volume calculated" ]       ], [
         fhir:index 145;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "15323-9" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag/Prostate volume calculated from height, width and length" ]       ], [
         fhir:index 146;
         fhir:ValueSet.compose.include.concept.code [ fhir:value "15324-7" ];
         fhir:ValueSet.compose.include.concept.display [ fhir:value "Prostate specific Ag/Prostate volume calculated from planimetry" ]       ]     ]
  ].

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.