HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU Ballot 1

This page is part of the HL7 FHIR Implementation Guide: minimal Common Oncology Data Elements (mCODE) Release 1 - US Realm | STU1 (v0.9.1: STU 1 Ballot 1) based on FHIR R4. The current version which supercedes this version is 2.0.0. For a full list of available versions, see the Directory of published versions

GeneticTestMethodVS


<ValueSet xmlns="http://hl7.org/fhir">
  <id value="onco-core-GeneticTestMethodVS"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml">
<p><b>GeneticTestMethodVS ValueSet</b></p>
<p>The method used to perform a genetic test, drawn from NCI Thesaurus. Examples include Fluorescent in situ hybridization (FISH), polymerase chain reaction-based assays (PCR), and next-generation sequencing (NGS).

FHIR is currently unable to handle values from NCI Thesaurus, so no values are listed in the Expansion, below. The values ARE in the downloads. For convenience, here is a listing of values in this value set:
NCIT#C130179       'Allele Specific Primer Polymerase Chain Reaction'
NCIT#C18084        'Comparative Genomic Hybridization'
NCIT#C19641        'Dideoxy Chain Termination DNA Sequencing'
NCIT#C63328        'DNA Methylation Analysis'
NCIT#C17563        'Fluorescence In Situ Hybridization'
NCIT#C16768        'Karyotyping'
NCIT#C18477        'Microarray Analysis'
NCIT#C139286       'Microsatellite Stability Assessment'
NCIT#C116161       'Multiplex Ligation-dependent Probe Amplification'
NCIT#C101293       'Next Generation Sequencing'
NCIT#C17003        'Polymerase Chain Reaction'
NCIT#C51962        'Real Time PCR'
NCIT#C17093        'Restriction Fragment Length Polymorphism'
NCIT#C18136        'Reverse Transcriptase-Polymerase Chain Reaction'
NCIT#C18473        'RNA Analysis'
NCIT#C17565        'Sequence Analysis'
NCIT#C116151       'Single Nucleotide Polymorphism Array'
NCIT#C16356        'Southern Blotting'</p>
</div>
  </text>
  <url
       value="http://hl7.org/fhir/us/mcode/ValueSet/onco-core-GeneticTestMethodVS"/>
  <version value="0.9.1"/>
  <name value="GeneticTestMethodVS"/>
  <title value="GeneticTestMethodVS"/>
  <status value="draft"/>
  <date value="2019-08-01T00:00:00-04:00"/>
  <publisher value="HL7 International Clinical Interoperability Council"/>
  <contact>
    <telecom>
      <system value="url"/>
      <value value="http://www.hl7.org/Special/committees/cic"/>
    </telecom>
  </contact>
  <description
               value="The method used to perform a genetic test, drawn from NCI Thesaurus. Examples include Fluorescent in situ hybridization (FISH), polymerase chain reaction-based assays (PCR), and next-generation sequencing (NGS).

FHIR is currently unable to handle values from NCI Thesaurus, so no values are listed in the Expansion, below. The values ARE in the downloads. For convenience, here is a listing of values in this value set:
NCIT#C130179       &#39;Allele Specific Primer Polymerase Chain Reaction&#39;
NCIT#C18084        &#39;Comparative Genomic Hybridization&#39;
NCIT#C19641        &#39;Dideoxy Chain Termination DNA Sequencing&#39;
NCIT#C63328        &#39;DNA Methylation Analysis&#39;
NCIT#C17563        &#39;Fluorescence In Situ Hybridization&#39;
NCIT#C16768        &#39;Karyotyping&#39;
NCIT#C18477        &#39;Microarray Analysis&#39;
NCIT#C139286       &#39;Microsatellite Stability Assessment&#39;
NCIT#C116161       &#39;Multiplex Ligation-dependent Probe Amplification&#39;
NCIT#C101293       &#39;Next Generation Sequencing&#39;
NCIT#C17003        &#39;Polymerase Chain Reaction&#39;
NCIT#C51962        &#39;Real Time PCR&#39;
NCIT#C17093        &#39;Restriction Fragment Length Polymorphism&#39;
NCIT#C18136        &#39;Reverse Transcriptase-Polymerase Chain Reaction&#39;
NCIT#C18473        &#39;RNA Analysis&#39;
NCIT#C17565        &#39;Sequence Analysis&#39;
NCIT#C116151       &#39;Single Nucleotide Polymorphism Array&#39;
NCIT#C16356        &#39;Southern Blotting&#39;"/>
  <compose>
    <include>
      <system value="http://ncit.nci.nih.gov"/>
      <concept>
        <code value="C130179"/>
        <display value="Allele Specific Primer Polymerase Chain Reaction"/>
      </concept>
      <concept>
        <code value="C18084"/>
        <display value="Comparative Genomic Hybridization"/>
      </concept>
      <concept>
        <code value="C19641"/>
        <display value="Dideoxy Chain Termination DNA Sequencing"/>
      </concept>
      <concept>
        <code value="C63328"/>
        <display value="DNA Methylation Analysis"/>
      </concept>
      <concept>
        <code value="C17563"/>
        <display value="Fluorescence In Situ Hybridization"/>
      </concept>
      <concept>
        <code value="C16768"/>
        <display value="Karyotyping"/>
      </concept>
      <concept>
        <code value="C18477"/>
        <display value="Microarray Analysis"/>
      </concept>
      <concept>
        <code value="C139286"/>
        <display value="Microsatellite Stability Assessment"/>
      </concept>
      <concept>
        <code value="C116161"/>
        <display value="Multiplex Ligation-dependent Probe Amplification"/>
      </concept>
      <concept>
        <code value="C101293"/>
        <display value="Next Generation Sequencing"/>
      </concept>
      <concept>
        <code value="C17003"/>
        <display value="Polymerase Chain Reaction"/>
      </concept>
      <concept>
        <code value="C51962"/>
        <display value="Real Time PCR"/>
      </concept>
      <concept>
        <code value="C17093"/>
        <display value="Restriction Fragment Length Polymorphism"/>
      </concept>
      <concept>
        <code value="C18136"/>
        <display value="Reverse Transcriptase-Polymerase Chain Reaction"/>
      </concept>
      <concept>
        <code value="C18473"/>
        <display value="RNA Analysis"/>
      </concept>
      <concept>
        <code value="C17565"/>
        <display value="Sequence Analysis"/>
      </concept>
      <concept>
        <code value="C116151"/>
        <display value="Single Nucleotide Polymorphism Array"/>
      </concept>
      <concept>
        <code value="C16356"/>
        <display value="Southern Blotting"/>
      </concept>
    </include>
  </compose>
</ValueSet>