HL7 FHIR Implementation Guide: Breast Cancer Data, Release 1 - US Realm (Draft for Comment 2)

This page is part of the Breast Cancer Data Logical Models and FHIR Profiles (v0.2.0: STU 1 Draft) based on FHIR R3. . For a full list of available versions, see the Directory of published versions

SpecimenModel

{
  "resourceType" : "StructureDefinition",
  "id" : "cimi-entity-Specimen-model",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns="http://www.w3.org/1999/xhtml">
  <p><b>BC Specimen Logical Model</b></p>
  <p>A specimen is a substance, physical object, or collection of objects, that the laboratory considers a single discrete, uniquely identified unit that is the subject of one or more steps in the laboratory workflow. A specimen may include multiple physical pieces as long as they are considered a single unit within the laboratory workflow. A specimen results from one to many specimen collection procedures, and may be contained in multiple specimen containers. Specimen may have one or more processing activities.</p>
</div>"
  },
  "url" : "http://hl7.org/fhir/us/breastcancer/StructureDefinition/cimi-entity-Specimen-model",
  "identifier" : [
    {
      "system" : "http://hl7.org/fhir/us/breastcancer",
      "value" : "cimi.entity.Specimen"
    }
  ],
  "version" : "0.2.0",
  "name" : "SpecimenModel",
  "title" : "BC Specimen Logical Model",
  "status" : "draft",
  "date" : "2018-08-17T00:00:00+10:00",
  "publisher" : "The HL7 Cancer Interoperability Group sponsored by Clinical Interoperability Council Work Group (CIC)",
  "contact" : [
    {
      "telecom" : [
        {
          "system" : "url",
          "value" : "http://www.hl7.org/Special/committees/cic/index.cfm"
        }
      ]
    }
  ],
  "description" : "A specimen is a substance, physical object, or collection of objects, that the laboratory considers a single discrete, uniquely identified unit that is the subject of one or more steps in the laboratory workflow. A specimen may include multiple physical pieces as long as they are considered a single unit within the laboratory workflow. A specimen results from one to many specimen collection procedures, and may be contained in multiple specimen containers. Specimen may have one or more processing activities.",
  "kind" : "logical",
  "abstract" : false,
  "type" : "cimi-entity-Specimen-model",
  "baseDefinition" : "http://hl7.org/fhir/StructureDefinition/Element",
  "derivation" : "specialization",
  "snapshot" : {
    "element" : [
      {
        "id" : "cimi-entity-Specimen-model",
        "path" : "cimi-entity-Specimen-model",
        "definition" : "A specimen is a substance, physical object, or collection of objects, that the laboratory considers a single discrete, uniquely identified unit that is the subject of one or more steps in the laboratory workflow. A specimen may include multiple physical pieces as long as they are considered a single unit within the laboratory workflow. A specimen results from one to many specimen collection procedures, and may be contained in multiple specimen containers. Specimen may have one or more processing activities.",
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      },
      {
        "id" : "cimi-entity-Specimen-model.accessionIdentifier",
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        "definition" : "Identifier assigned by the lab",
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        },
        "type" : [
          {
            "code" : "http://hl7.org/fhir/us/breastcancer/StructureDefinition/cimi-entity-AccessionIdentifier-model"
          }
        ],
        "mustSupport" : false,
        "isModifier" : false,
        "isSummary" : false
      },
      {
        "id" : "cimi-entity-Specimen-model.specimenStatus",
        "path" : "cimi-entity-Specimen-model.specimenStatus",
        "code" : [
          {
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            "code" : "C0449438"
          }
        ],
        "short" : "State of the specimen, such as obtained, processed, used.",
        "definition" : "State of the specimen, such as obtained, processed, used.",
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          "valueSetReference" : {
            "reference" : "http://hl7.org/fhir/ValueSet/specimen-status"
          }
        }
      },
      {
        "id" : "cimi-entity-Specimen-model.type",
        "path" : "cimi-entity-Specimen-model.type",
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        "short" : "The most specific code (lowest level term) describing the kind or sort of thing being represented.",
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      },
      {
        "id" : "cimi-entity-Specimen-model.collectionSource",
        "path" : "cimi-entity-Specimen-model.collectionSource",
        "short" : "The person or thing the sample was obtained from.",
        "definition" : "The person or thing the sample was obtained from.",
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          },
          {
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          },
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          },
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        ],
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      {
        "id" : "cimi-entity-Specimen-model.collectionTime",
        "path" : "cimi-entity-Specimen-model.collectionTime",
        "short" : "When the sample was obtained, as a specific time or time period.",
        "definition" : "When the sample was obtained, as a specific time or time period.",
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        ],
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      {
        "id" : "cimi-entity-Specimen-model.collectionMethod",
        "path" : "cimi-entity-Specimen-model.collectionMethod",
        "short" : "How the specimen was obtained.",
        "definition" : "How the specimen was obtained.",
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        ],
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      },
      {
        "id" : "cimi-entity-Specimen-model.collectionSite",
        "path" : "cimi-entity-Specimen-model.collectionSite",
        "code" : [
          {
            "system" : "http://loinc.org",
            "code" : "72369-2"
          }
        ],
        "short" : "The body site where specimen was collected",
        "definition" : "The body site where specimen was collected",
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        ],
        "mustSupport" : false,
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      },
      {
        "id" : "cimi-entity-Specimen-model.sourceSpecimen",
        "path" : "cimi-entity-Specimen-model.sourceSpecimen",
        "short" : "Identifier for the source specimen from which this specimen was derived.",
        "definition" : "Identifier for the source specimen from which this specimen was derived.",
        "min" : 0,
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          }
        ],
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      },
      {
        "id" : "cimi-entity-Specimen-model.receivedTime",
        "path" : "cimi-entity-Specimen-model.receivedTime",
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            "code" : "C2735124"
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        ],
        "short" : "Time the item was delivered to, or accepted by, the receiving facility or unit.",
        "definition" : "Time the item was delivered to, or accepted by, the receiving facility or unit.",
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        ],
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      },
      {
        "id" : "cimi-entity-Specimen-model.specimenContainer",
        "path" : "cimi-entity-Specimen-model.specimenContainer",
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        "definition" : "Direct container of specimen (tube&#47;slide, etc.)",
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      {
        "id" : "cimi-entity-Specimen-model.specimenTreatment",
        "path" : "cimi-entity-Specimen-model.specimenTreatment",
        "short" : "Treatment performed on the specimen.",
        "definition" : "Treatment performed on the specimen.",
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      },
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        "id" : "cimi-entity-Specimen-model.handlingRisk",
        "path" : "cimi-entity-Specimen-model.handlingRisk",
        "short" : "Cautions on the handling of this specimen.",
        "definition" : "Cautions on the handling of this specimen.",
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      },
      {
        "id" : "cimi-entity-Specimen-model.specialHandling",
        "path" : "cimi-entity-Specimen-model.specialHandling",
        "short" : "Information about the proper handling of the specimen.",
        "definition" : "Information about the proper handling of the specimen.",
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          "path" : "cimi-entity-Specimen-model.specialHandling",
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    ]
  },
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    "element" : [
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      },
      {
        "id" : "cimi-entity-Specimen-model.collectionSource",
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        "short" : "The person or thing the sample was obtained from.",
        "definition" : "The person or thing the sample was obtained from.",
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          },
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            "targetProfile" : "http://hl7.org/fhir/us/breastcancer/StructureDefinition/cimi-entity-Substance-model"
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        "id" : "cimi-entity-Specimen-model.collectionTime",
        "path" : "cimi-entity-Specimen-model.collectionTime",
        "short" : "When the sample was obtained, as a specific time or time period.",
        "definition" : "When the sample was obtained, as a specific time or time period.",
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        "id" : "cimi-entity-Specimen-model.collectionMethod",
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        "short" : "How the specimen was obtained.",
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      {
        "id" : "cimi-entity-Specimen-model.collectionSite",
        "path" : "cimi-entity-Specimen-model.collectionSite",
        "code" : [
          {
            "system" : "http://loinc.org",
            "code" : "72369-2"
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        ],
        "short" : "The body site where specimen was collected",
        "definition" : "The body site where specimen was collected",
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        "max" : "1",
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          "path" : "cimi-entity-Specimen-model.collectionSite",
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        ],
        "mustSupport" : false,
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      },
      {
        "id" : "cimi-entity-Specimen-model.sourceSpecimen",
        "path" : "cimi-entity-Specimen-model.sourceSpecimen",
        "short" : "Identifier for the source specimen from which this specimen was derived.",
        "definition" : "Identifier for the source specimen from which this specimen was derived.",
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            "code" : "C2735124"
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        ],
        "short" : "Time the item was delivered to, or accepted by, the receiving facility or unit.",
        "definition" : "Time the item was delivered to, or accepted by, the receiving facility or unit.",
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        "id" : "cimi-entity-Specimen-model.specimenContainer",
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      },
      {
        "id" : "cimi-entity-Specimen-model.specimenTreatment",
        "path" : "cimi-entity-Specimen-model.specimenTreatment",
        "short" : "Treatment performed on the specimen.",
        "definition" : "Treatment performed on the specimen.",
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        ],
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      },
      {
        "id" : "cimi-entity-Specimen-model.handlingRisk",
        "path" : "cimi-entity-Specimen-model.handlingRisk",
        "short" : "Cautions on the handling of this specimen.",
        "definition" : "Cautions on the handling of this specimen.",
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