Observation-example-haplotype1.xml

Example of haplotype data that is basis of a diplotype data (id = "example-haplotype1")

<Observation xmlns="http://hl7.org/fhir">
  <id value="example-haplotype1"/> 
  <text> <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative with Details</b> </p> <p> <b> id</b> : example-haplotype1</p> <p> <b> status</b> : unknown</p> <p> <b> code</b> : Genetic analysis master panel-- This is the parent OBR for the panel holding all of
         the associated observations that can be reported with a molecular genetics analysis result.
         <span> (Details : {LOINC code '55233-1' = 'Genetic analysis master panel - Blood or Tissue by
           Molecular genetics method', given as 'Genetic analysis master panel-- This is the parent
           OBR for the panel holding all of the associated observations that can be reported with
           a molecular genetics analysis result.'})</span> </p> <p> <b> subject</b> : <a> J*********** C***********</a> </p> <p> <b> issued</b> : 03/04/2013 3:30:10 PM</p> <p> <b> value</b> : *35B <span> (Details : {http://pharmakb.org code 'PA165971587' = 'PA165971587', given as '*35B'})</span> </p> <p> <b> specimen</b> : <a> Molecular Specimen ID: MLD45-Z4-1234</a> </p> <blockquote> <p> <b> related</b> </p> <p> <b> type</b> : derived-from</p> <p> <b> target</b> : <a> Sequence/example-pgx-1</a> </p> </blockquote> <blockquote> <p> <b> related</b> </p> <p> <b> type</b> : derived-from</p> <p> <b> target</b> : <a> Sequence/example-pgx-2</a> </p> </blockquote> </div> </text> <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsGene">
    <valueCodeableConcept> 
      <coding> 
        <system value="http://www.genenames.org"/> 
        <code value="2625"/> 
        <display value="CYP2D6"/> 
      </coding> 
    </valueCodeableConcept> 
  </extension> 
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsSequence">
    <valueReference> 
      <reference value="Sequence/example-sequence1"/> 
    </valueReference> 
  </extension> 
  <extension url="http://hl7.org/fhir/StructureDefinition/observation-geneticsSequence">
    <valueReference> 
      <reference value="Sequence/example-sequence2"/> 
    </valueReference> 
  </extension> 
  <status value="unknown"/> 
  <code> 
    <coding> 
      <system value="http://loinc.org"/> 
      <code value="55233-1"/> 
      <display value="Genetic analysis master panel-- This is the parent OBR for the panel holding all of the
       associated observations that can be reported with a molecular genetics analysis result."/> 
    </coding> 
  </code>   
  <subject> 
    <reference value="Patient/727127"/> 
    <display value="J*********** C***********"/> 
  </subject> 
  <issued value="2013-04-03T15:30:10+01:00"/> 
  <valueCodeableConcept> 
    <coding> 
      <system value="http://pharmakb.org"/> 
      <code value="PA165971587"/> 
      <display value="*35B"/> 
    </coding> 
  </valueCodeableConcept> 
  <specimen> 
    <reference value="Specimen/genetics-example1-somatic"/> 
    <display value="Molecular Specimen ID: MLD45-Z4-1234"/> 
  </specimen> 
  <!--   >If you do not like "related", you can delete this block<   -->
  <related> 
    <type value="derived-from"/> 
    <target> 
      <reference value="Sequence/example-pgx-1"/> 
    </target> 
  </related> 
  <related> 
    <type value="derived-from"/> 
    <target> 
      <reference value="Sequence/example-pgx-2"/> 
    </target> 
  </related> 
</Observation>