FHIR Release 3 (STU)

This page is part of the FHIR Specification (v3.0.2: STU 3). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions

Extension: DNAVariantId

Orders and Observations Work Group

Maturity Level: 1

Informative

Use Context: Any

URL for this extension:

http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId

Status: draft. Extension maintained by: Health Level Seven International (Clinical Genomics)

Identifier for DNA sequence variant. If a germline variant, ClinVar or dbSNP identifier should be used. If a somatic variant, COSMIC identifier should be used, unless in ClinVar then either maybe used. Need to provide the code system used (ClinVar, dbSNP, COSMIC) LOINC Code: (48003-8).

Context of Use: Use on element: Observation

usage info: insert a list of places where this extension is used

Summary

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	CodeableConcept	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId DNAVariantId: Identifier for DNA sequence variant. If a germline variant, ClinVar or dbSNP identifier should be used. If a somatic variant, COSMIC identifier should be used, unless in ClinVar then either maybe used. Need to provide the code system used (ClinVar, dbSNP, COSMIC) LOINC Code: ([48003-8](http://loinc.org/48003-8)). Use on element: Observation
Documentation for this format

Full Structure

Name	Card.	Type	Description & Constraints
extension	0..1	Extension	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId DNAVariantId: Identifier for DNA sequence variant. If a germline variant, ClinVar or dbSNP identifier should be used. If a somatic variant, COSMIC identifier should be used, unless in ClinVar then either maybe used. Need to provide the code system used (ClinVar, dbSNP, COSMIC) LOINC Code: ([48003-8](http://loinc.org/48003-8)). Use on element: Observation
url	1..1	uri	"http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId"
valueCodeableConcept	0..1	CodeableConcept	Value of extension
Documentation for this format

XML Template

<!-- DNAVariantId -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId" >
  <!-- from Element: extension -->
 <valueCodeableConcept><!-- 0..1 CodeableConcept 
     Value of extension --></valueCodeableConcept>
</extension>

JSON Template

{ // DNAVariantId
  // from Element: extension
    "extension" : [ //  sliced by value:url  in the specified orderOpen
    ],
    "url" : "http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId", // R! 
    "valueCodeableConcept" : { CodeableConcept } //Value of extension
  }

Summary

Name	Flags	Card.	Type	Description & Constraints
extension		0..1	CodeableConcept	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId DNAVariantId: Identifier for DNA sequence variant. If a germline variant, ClinVar or dbSNP identifier should be used. If a somatic variant, COSMIC identifier should be used, unless in ClinVar then either maybe used. Need to provide the code system used (ClinVar, dbSNP, COSMIC) LOINC Code: ([48003-8](http://loinc.org/48003-8)). Use on element: Observation
Documentation for this format

Full Structure

Name	Card.	Type	Description & Constraints
extension	0..1	Extension	URL = http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId DNAVariantId: Identifier for DNA sequence variant. If a germline variant, ClinVar or dbSNP identifier should be used. If a somatic variant, COSMIC identifier should be used, unless in ClinVar then either maybe used. Need to provide the code system used (ClinVar, dbSNP, COSMIC) LOINC Code: ([48003-8](http://loinc.org/48003-8)). Use on element: Observation
url	1..1	uri	"http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId"
valueCodeableConcept	0..1	CodeableConcept	Value of extension
Documentation for this format

XML Template

<!-- DNAVariantId -->

<extension xmlns="http://hl7.org/fhir"
     url="http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId" >
  <!-- from Element: extension -->
 <valueCodeableConcept><!-- 0..1 CodeableConcept 
     Value of extension --></valueCodeableConcept>
</extension>

JSON Template

{ // DNAVariantId
  // from Element: extension
    "extension" : [ //  sliced by value:url  in the specified orderOpen
    ],
    "url" : "http://hl7.org/fhir/StructureDefinition/observation-geneticsDNAVariantId", // R! 
    "valueCodeableConcept" : { CodeableConcept } //Value of extension
  }

Constraints

ele-1: All FHIR elements must have a @value or children (xpath: @value|f:*|h:div)
ext-1: Must have either extensions or value[x], not both (xpath: exists(f:extension)!=exists(f:*[starts-with(local-name(.), 'value')]))