This page is part of the FHIR Specification (v3.0.2: STU 3). The current version which supercedes this version is 5.0.0. For a full list of available versions, see the Directory of published versions . Page versions: R4B R4 R3
Clinical Genomics Work Group | Maturity Level: N/A | Ballot Status: Informative | Compartments: Not linked to any defined compartments |
Sequence Graphic example-3
@prefix fhir: <http://hl7.org/fhir/> . @prefix owl: <http://www.w3.org/2002/07/owl#> . @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . # - resource ------------------------------------------------------------------- <http://hl7.org/fhir/Sequence/graphic-example-3> a fhir:Sequence; fhir:nodeRole fhir:treeRoot; fhir:Resource.id [ fhir:value "graphic-example-3"]; fhir:DomainResource.text [ fhir:Narrative.status [ fhir:value "generated" ]; fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: graphic-example-3</p><p><b>type</b>: dna</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table><tr><td>-</td><td><b>ReferenceSeqPointer</b></td><td><b>Strand</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td>*</td><td><a>Sequence/graphic-example-5</a></td><td>1</td><td>128273732</td><td>128273736</td></tr></table><h3>Variants</h3><table><tr><td>-</td><td><b>Start</b></td><td><b>End</b></td><td><b>ObservedAllele</b></td><td><b>ReferenceAllele</b></td><td><b>Cigar</b></td></tr><tr><td>*</td><td>1282737234</td><td>128273736</td><td>GA</td><td>AT</td><td>2M</td></tr></table><p><b>pointer</b>: <a>Sequence/graphic-example-4</a></p></div>" ]; fhir:Sequence.type [ fhir:value "dna"]; fhir:Sequence.coordinateSystem [ fhir:value "0"^^xsd:integer]; fhir:Sequence.referenceSeq [ fhir:Sequence.referenceSeq.referenceSeqPointer [ fhir:link <http://hl7.org/fhir/Sequence/graphic-example-5>; fhir:Reference.reference [ fhir:value "Sequence/graphic-example-5" ] ]; fhir:Sequence.referenceSeq.strand [ fhir:value "1"^^xsd:integer ]; fhir:Sequence.referenceSeq.windowStart [ fhir:value "128273732"^^xsd:integer ]; fhir:Sequence.referenceSeq.windowEnd [ fhir:value "128273736"^^xsd:integer ] ]; fhir:Sequence.variant [ fhir:index 0; fhir:Sequence.variant.start [ fhir:value "1282737234"^^xsd:integer ]; fhir:Sequence.variant.end [ fhir:value "128273736"^^xsd:integer ]; fhir:Sequence.variant.observedAllele [ fhir:value "GA" ]; fhir:Sequence.variant.referenceAllele [ fhir:value "AT" ]; fhir:Sequence.variant.cigar [ fhir:value "2M" ] ]; fhir:Sequence.pointer [ fhir:index 0; fhir:link <http://hl7.org/fhir/Sequence/graphic-example-4>; fhir:Reference.reference [ fhir:value "Sequence/graphic-example-4" ] ] . <http://hl7.org/fhir/Sequence/graphic-example-5> a fhir:Sequence . <http://hl7.org/fhir/Sequence/graphic-example-4> a fhir:Sequence . # - ontology header ------------------------------------------------------------ <http://hl7.org/fhir/Sequence/graphic-example-3.ttl> a owl:Ontology; owl:imports fhir:fhir.ttl; owl:versionIRI <http://hl7.org/fhir/STU3/Sequence/graphic-example-3.ttl> . # -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.