This page is part of the FHIR Specification (v5.0.0: R5 - STU). This is the current published version in it's permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions 
. Page versions: R5 R4B R4 R3
Example MolecularSequence/coord-0-base (Turtle)
Raw Turtle (+ also see Turtle/RDF Format Specification)
Example of a record with 0-based coordinatesystem
@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <https://loinc.org/rdf/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
[a fhir:MolecularSequence ;
fhir:nodeRole fhir:treeRoot ;
fhir:id [ fhir:v "coord-0-base"] ; #
fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: MolecularSequence</b><a name=\"coord-0-base\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource MolecularSequence "coord-0-base" </p></div><p><b>type</b>: dna</p><blockquote><p><b>relative</b></p><p><b>coordinateSystem</b>: 0-based character counting <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#LA30101-2)</span></p><h3>StartingSequences</h3><table class=\"grid\"><tr><td>-</td><td><b>Sequence[x]</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td><td><b>Strand</b></td></tr><tr><td>*</td><td>ACGTAGTC</td><td>0</td><td>8</td><td>watson</td></tr></table><blockquote><p><b>edit</b></p><p><b>start</b>: 2</p><p><b>end</b>: 2</p><p><b>replacementSequence</b>: ATG</p><p><b>replacedSequence</b>: -</p></blockquote><blockquote><p><b>edit</b></p><p><b>start</b>: 4</p><p><b>end</b>: 5</p><p><b>replacementSequence</b>: T</p><p><b>replacedSequence</b>: A</p></blockquote><blockquote><p><b>edit</b></p><p><b>start</b>: 6</p><p><b>end</b>: 7</p><p><b>replacementSequence</b>: -</p><p><b>replacedSequence</b>: T</p></blockquote></blockquote></div>"
] ; #
fhir:type [ fhir:v "dna"] ; #
fhir:relative ( [
fhir:coordinateSystem [
fhir:coding ( [
a loinc:LA30101-2 ;
fhir:system [ fhir:v "http://loinc.org"^^xsd:anyURI ] ;
fhir:code [ fhir:v "LA30101-2" ] ;
fhir:display [ fhir:v "0-based character counting" ]
] )
] ;
fhir:startingSequence [
fhir:sequence [ fhir:v "ACGTAGTC" ] ;
fhir:windowStart [ fhir:v "0"^^xsd:integer ] ;
fhir:windowEnd [ fhir:v "8"^^xsd:integer ] ;
fhir:strand [ fhir:v "watson" ]
] ;
fhir:edit ( [
fhir:start [ fhir:v "2"^^xsd:integer ] ;
fhir:end [ fhir:v "2"^^xsd:integer ] ;
fhir:replacementSequence [ fhir:v "ATG" ] ;
fhir:replacedSequence [ fhir:v "-" ]
] [
fhir:start [ fhir:v "4"^^xsd:integer ] ;
fhir:end [ fhir:v "5"^^xsd:integer ] ;
fhir:replacementSequence [ fhir:v "T" ] ;
fhir:replacedSequence [ fhir:v "A" ]
] [
fhir:start [ fhir:v "6"^^xsd:integer ] ;
fhir:end [ fhir:v "7"^^xsd:integer ] ;
fhir:replacementSequence [ fhir:v "-" ] ;
fhir:replacedSequence [ fhir:v "T" ]
] )
] )] . #
# -------------------------------------------------------------------------------------
Usage note: every effort has been made to ensure that the
examples are correct and useful, but they are not a normative part
of the specification.
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