Release 5

This page is part of the FHIR Specification (v5.0.0: R5 - STU). This is the current published version in it's permanent home (it will always be available at this URL). For a full list of available versions, see the Directory of published versions

Example GenomicStudy/WES-FullSequencedRegion-GRCh38 (XML)

Clinical Genomics Work GroupMaturity Level: N/AStandards Status: InformativeCompartments: Patient

Raw XML (canonical form + also see XML Format Specification)

Jump past Narrative

DocumentReference - WES Full Sequenced Region - GRCh38 (id = "WES-FullSequencedRegion-GRCh38")

<?xml version="1.0" encoding="UTF-8"?>

<DocumentReference xmlns="http://hl7.org/fhir">
  <id value="WES-FullSequencedRegion-GRCh38"/> 
  <text> 
    <status value="generated"/> <div xmlns="http://www.w3.org/1999/xhtml"><p> <b> Generated Narrative</b> </p> <div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border:
       1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">Resource &quot;WES_FullSequencedRegion_GRCh38&quot; </p> </div> <p> <b> identifier</b> : id: 11117</p> <p> <b> status</b> : current</p> <p> <b> docStatus</b> : preliminary</p> <p> <b> description</b> : A sample Document Reference instance representing a BED file that may be used
         as input or output of a genomic analysis pipeline.</p> <p> <b> securityLabel</b> : Restricted <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/3.1.0/CodeSystem-v3-Confidentiality.html">Confidentiality</a> #R)</span> </p> <blockquote> <p> <b> content</b> </p> </blockquote> </div> 
  </text> 
  <identifier> 
    <system value="http://www.somesystemabc.net/identifiers/files"/> 
    <value value="11117"/> 
  </identifier> 
  <status value="current"/> 
  <docStatus value="preliminary"/> 
  <description value="WES_FullSequencedRegion_GRCh38: A sample Document Reference instance representing
   a BED file that may be used as input or output of a genomic analysis pipeline."/> 
  <securityLabel> 
    <coding> 
      <system value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/> 
      <code value="R"/> 
      <display value="Restricted"/> 
    </coding> 
  </securityLabel> 
  <content> 
    <attachment> 
      <url value="https://chat.fhir.org/user_uploads/10155/BILYJerATC59WlG15J316BEf/WES_FullSequencedRegion_GRC
      h38.bed"/>    <!--   This line may need to be changed later   -->
      <title value="WES_FullSequencedRegion_GRCh38"/> 
      <creation value="2019-03-01T01:02:01+01:00"/> 
    </attachment> 
  </content> 
</DocumentReference>

Usage note: every effort has been made to ensure that the examples are correct and useful, but they are not a normative part of the specification.