R6 Ballot (2nd Draft)

Publish-box (todo)

4.4.1.665 ValueSet http://hl7.org/fhir/ValueSet/genomicstudy-methodtype

Clinical Genomics icon Work Group  Maturity Level: 1 Trial Use Use Context: Country: World, Not yet ready for Production use
Official URL: http://hl7.org/fhir/ValueSet/genomicstudy-methodtype Version: 6.0.0-ballot2
draft as of 2022-08-17 Computable Name: GenomicStudyMethodType
Flags: Experimental OID: 2.16.840.1.113883.4.642.3.3085

This value set is used in the following places:

4.4.1.665.1 Definition

The method type of the GenomicStudy analysis.

4.4.1.665.2 Content Logical Definition

Generated Narrative: ValueSet genomicstudy-methodtype

Last updated: 2024-08-12T19:52:12.437+11:00

Profile: Shareable ValueSet

 

4.4.1.665.3 Expansion

This expansion generated 12 Aug 2024

Generated Narrative: ValueSet

Last updated: 2024-08-12T19:52:12.437+11:00

Profile: Shareable ValueSet

Expansion based on codesystem Genomic Study Method Type v6.0.0-ballot2 (CodeSystem)

This value set contains 81 concepts

CodeSystemDisplay
  biochemical-genetics http://hl7.org/fhir/genomicstudy-methodtype Biochemical Genetics
  cytogenetics http://hl7.org/fhir/genomicstudy-methodtype Cytogenetics
  molecular-genetics http://hl7.org/fhir/genomicstudy-methodtype Molecular Genetics
  analyte http://hl7.org/fhir/genomicstudy-methodtype Analyte
  chromosome-breakage-studies http://hl7.org/fhir/genomicstudy-methodtype Chromosome breakage studies
  deletion-duplication-analysis http://hl7.org/fhir/genomicstudy-methodtype Deletion/duplication analysis
  detection-of-homozygosity http://hl7.org/fhir/genomicstudy-methodtype Detection of homozygosity
  enzyme-assay http://hl7.org/fhir/genomicstudy-methodtype Enzyme assay
  fish-interphase http://hl7.org/fhir/genomicstudy-methodtype FISH-interphase
  fish-metaphase http://hl7.org/fhir/genomicstudy-methodtype FISH-metaphase
  flow-cytometry http://hl7.org/fhir/genomicstudy-methodtype Flow cytometry
  fish http://hl7.org/fhir/genomicstudy-methodtype Fluorescence in situ hybridization (FISH)
  immunohistochemistry http://hl7.org/fhir/genomicstudy-methodtype Immunohistochemistry
  karyotyping http://hl7.org/fhir/genomicstudy-methodtype Karyotyping
  linkage-analysis http://hl7.org/fhir/genomicstudy-methodtype Linkage analysis
  methylation-analysis http://hl7.org/fhir/genomicstudy-methodtype Methylation analysis
  msi http://hl7.org/fhir/genomicstudy-methodtype Microsatellite instability testing (MSI)
  m-fish http://hl7.org/fhir/genomicstudy-methodtype Multicolor FISH (M-FISH)
  mutation-scanning-of-select-exons http://hl7.org/fhir/genomicstudy-methodtype Mutation scanning of select exons
  mutation-scanning-of-the-entire-coding-region http://hl7.org/fhir/genomicstudy-methodtype Mutation scanning of the entire coding region
  protein-analysis http://hl7.org/fhir/genomicstudy-methodtype Protein analysis
  protein-expression http://hl7.org/fhir/genomicstudy-methodtype Protein expression
  rna-analysis http://hl7.org/fhir/genomicstudy-methodtype RNA analysis
  sequence-analysis-of-select-exons http://hl7.org/fhir/genomicstudy-methodtype Sequence analysis of select exons
  sequence-analysis-of-the-entire-coding-region http://hl7.org/fhir/genomicstudy-methodtype Sequence analysis of the entire coding region
  sister-chromatid-exchange http://hl7.org/fhir/genomicstudy-methodtype Sister chromatid exchange
  targeted-variant-analysis http://hl7.org/fhir/genomicstudy-methodtype Targeted variant analysis
  udp http://hl7.org/fhir/genomicstudy-methodtype Uniparental disomy study (UPD)
  aspe http://hl7.org/fhir/genomicstudy-methodtype Allele-specific primer extension (ASPE)
  alternative-splicing-detection http://hl7.org/fhir/genomicstudy-methodtype Alternative splicing detection
  bi-directional-sanger-sequence-analysis http://hl7.org/fhir/genomicstudy-methodtype Bi-directional Sanger Sequence Analysis
  c-banding http://hl7.org/fhir/genomicstudy-methodtype C-banding
  cia http://hl7.org/fhir/genomicstudy-methodtype Chemiluminescent Immunoassay (CIA)
  chromatin-immunoprecipitation-on-chip http://hl7.org/fhir/genomicstudy-methodtype Chromatin Immunoprecipitation on ChIP
  comparative-genomic-hybridization http://hl7.org/fhir/genomicstudy-methodtype Comparative Genomic Hybridization
  damid http://hl7.org/fhir/genomicstudy-methodtype DamID
  digital-virtual-karyotyping http://hl7.org/fhir/genomicstudy-methodtype Digital / Virtual karyotyping
  digital-microfluidic-microspheres http://hl7.org/fhir/genomicstudy-methodtype Digital microfluidic microspheres
  enzymatic-levels http://hl7.org/fhir/genomicstudy-methodtype Enzymatic levels
  enzyme-activity http://hl7.org/fhir/genomicstudy-methodtype Enzyme activity
  elisa http://hl7.org/fhir/genomicstudy-methodtype Enzyme-Linked Immunosorbent Assays (ELISA)
  fluorometry http://hl7.org/fhir/genomicstudy-methodtype Fluorometry
  fusion-genes-microarrays http://hl7.org/fhir/genomicstudy-methodtype Fusion genes microarrays
  g-banding http://hl7.org/fhir/genomicstudy-methodtype G-banding
  gc-ms http://hl7.org/fhir/genomicstudy-methodtype Gas chromatography–mass spectrometry (GC-MS)
  gene-expression-profiling http://hl7.org/fhir/genomicstudy-methodtype Gene expression profiling
  gene-id http://hl7.org/fhir/genomicstudy-methodtype GeneID
  gold-nanoparticle-probe-technology http://hl7.org/fhir/genomicstudy-methodtype Gold nanoparticle probe technology
  hplc http://hl7.org/fhir/genomicstudy-methodtype High-performance liquid chromatography (HPLC)
  lc-ms http://hl7.org/fhir/genomicstudy-methodtype Liquid chromatography mass spectrometry (LC-MS)
  lc-ms-ms http://hl7.org/fhir/genomicstudy-methodtype Liquid chromatography-tandem mass spectrometry (LC-MS/MS)
  metabolite-levels http://hl7.org/fhir/genomicstudy-methodtype Metabolite levels
  methylation-specific-pcr http://hl7.org/fhir/genomicstudy-methodtype Methylation-specific PCR
  microarray http://hl7.org/fhir/genomicstudy-methodtype Microarray
  mlpa http://hl7.org/fhir/genomicstudy-methodtype Multiplex Ligation-dependent Probe Amplification (MLPA)
  ngs-mps http://hl7.org/fhir/genomicstudy-methodtype Next-Generation (NGS)/Massively parallel sequencing (MPS)
  ola http://hl7.org/fhir/genomicstudy-methodtype Oligonucleotide Ligation Assay (OLA)
  oligonucleotide-hybridization-based-dna-sequencing http://hl7.org/fhir/genomicstudy-methodtype Oligonucleotide hybridization-based DNA sequencing
  other http://hl7.org/fhir/genomicstudy-methodtype Other
  pcr http://hl7.org/fhir/genomicstudy-methodtype PCR
  pcr-with-allele-specific-hybridization http://hl7.org/fhir/genomicstudy-methodtype PCR with allele specific hybridization
  pcr-rflp-with-southern-hybridization http://hl7.org/fhir/genomicstudy-methodtype PCR-RFLP with Southern hybridization
  protein-truncation-test http://hl7.org/fhir/genomicstudy-methodtype Protein truncation test
  pyrosequencing http://hl7.org/fhir/genomicstudy-methodtype Pyrosequencing
  q-banding http://hl7.org/fhir/genomicstudy-methodtype Q-banding
  qpcr http://hl7.org/fhir/genomicstudy-methodtype Quantitative PCR (qPCR)
  r-banding http://hl7.org/fhir/genomicstudy-methodtype R-banding
  rflp http://hl7.org/fhir/genomicstudy-methodtype RFLP
  rt-lamp http://hl7.org/fhir/genomicstudy-methodtype RT-LAMP
  rt-pcr http://hl7.org/fhir/genomicstudy-methodtype RT-PCR
  rt-pcr-with-gel-analysis http://hl7.org/fhir/genomicstudy-methodtype RT-PCR with gel analysis
  rt-qpcr http://hl7.org/fhir/genomicstudy-methodtype RT-qPCR
  snp-detection http://hl7.org/fhir/genomicstudy-methodtype SNP Detection
  silver-staining http://hl7.org/fhir/genomicstudy-methodtype Silver staining
  sky http://hl7.org/fhir/genomicstudy-methodtype Spectral karyotyping (SKY)
  t-banding http://hl7.org/fhir/genomicstudy-methodtype T-banding
  ms-ms http://hl7.org/fhir/genomicstudy-methodtype Tandem mass spectrometry (MS/MS)
  tetra-nucleotide-repeat-by-pcr-or-southern-blot http://hl7.org/fhir/genomicstudy-methodtype Tetra-nucleotide repeat by PCR or Southern Blot
  tiling-arrays http://hl7.org/fhir/genomicstudy-methodtype Tiling Arrays
  trinucleotide-repeat-by-pcr-or-southern-blot http://hl7.org/fhir/genomicstudy-methodtype Trinucleotide repeat by PCR or Southern Blot
  uni-directional-sanger-sequencing http://hl7.org/fhir/genomicstudy-methodtype Uni-directional Sanger sequencing

 

See the full registry of value sets defined as part of FHIR.

Explanation of the columns that may appear on this page:

Lvl A few code lists that FHIR defines are hierarchical - each code is assigned a level. For value sets, levels are mostly used to organize codes for user convenience, but may follow code system hierarchy - see Code System for further information
Source The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance). If the code is in italics, this indicates that the code is not selectable ('Abstract')
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code