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4.4.1.664 ValueSet http://hl7.org/fhir/ValueSet/genomicstudy-dataformat

Clinical Genomics icon Work Group  Maturity Level: 1 Trial Use Use Context: Country: World, Not yet ready for Production use
Official URL: http://hl7.org/fhir/ValueSet/genomicstudy-dataformat Version: 6.0.0-ballot2
draft as of 2022-08-18 Computable Name: GenomicStudyDataFormat
Flags: Experimental OID: 2.16.840.1.113883.4.642.3.3084

This value set is used in the following places:

4.4.1.664.1 Definition

The data formats relevant to Genomic Study analysis.

4.4.1.664.2 Content Logical Definition

Generated Narrative: ValueSet genomicstudy-dataformat

Last updated: 2024-08-12T19:52:12.437+11:00

Profile: Shareable ValueSet

 

4.4.1.664.3 Expansion

This expansion generated 12 Aug 2024

Generated Narrative: ValueSet

Last updated: 2024-08-12T19:52:12.437+11:00

Profile: Shareable ValueSet

Expansion based on codesystem Genomic Study Data Format v6.0.0-ballot2 (CodeSystem)

This value set contains 40 concepts

CodeSystemDisplay
  bam http://hl7.org/fhir/genomicstudy-dataformat BAM
  bed http://hl7.org/fhir/genomicstudy-dataformat BED
  bedpe http://hl7.org/fhir/genomicstudy-dataformat BEDPE
  bedgraph http://hl7.org/fhir/genomicstudy-dataformat BedGraph
  bigbed http://hl7.org/fhir/genomicstudy-dataformat bigBed
  bigWig http://hl7.org/fhir/genomicstudy-dataformat bigWig
  birdsuite-files http://hl7.org/fhir/genomicstudy-dataformat Birdsuite-Files
  broadpeak http://hl7.org/fhir/genomicstudy-dataformat broadPeak
  cbs http://hl7.org/fhir/genomicstudy-dataformat CBS
  chemical-reactivity-probing-profiles http://hl7.org/fhir/genomicstudy-dataformat Chemical-Reactivity-Probing-Profiles
  chrom-sizes http://hl7.org/fhir/genomicstudy-dataformat chrom-sizes
  cn http://hl7.org/fhir/genomicstudy-dataformat CN
  custom-file-formats http://hl7.org/fhir/genomicstudy-dataformat Custom-File-Formats
  cytoband http://hl7.org/fhir/genomicstudy-dataformat Cytoband
  fasta http://hl7.org/fhir/genomicstudy-dataformat FASTA
  gct http://hl7.org/fhir/genomicstudy-dataformat GCT
  cram http://hl7.org/fhir/genomicstudy-dataformat CRAM
  genepred http://hl7.org/fhir/genomicstudy-dataformat genePred
  gff-gtf http://hl7.org/fhir/genomicstudy-dataformat GFF/GTF
  gistic http://hl7.org/fhir/genomicstudy-dataformat GISTIC
  goby http://hl7.org/fhir/genomicstudy-dataformat Goby
  gwas http://hl7.org/fhir/genomicstudy-dataformat GWAS
  igv http://hl7.org/fhir/genomicstudy-dataformat IGV
  loh http://hl7.org/fhir/genomicstudy-dataformat LOH
  maf-multiple-alignment-format http://hl7.org/fhir/genomicstudy-dataformat MAF-Multiple Alignment Format
  maf-mutation-annotation-format http://hl7.org/fhir/genomicstudy-dataformat MAF-Mutation-Annotation-Format
  merged-bam-file http://hl7.org/fhir/genomicstudy-dataformat Merged BAM File
  mut http://hl7.org/fhir/genomicstudy-dataformat MUT
  narrowpeak http://hl7.org/fhir/genomicstudy-dataformat narrowPeak
  psl http://hl7.org/fhir/genomicstudy-dataformat PSL
  res http://hl7.org/fhir/genomicstudy-dataformat RES
  rna-secondary-structure-formats http://hl7.org/fhir/genomicstudy-dataformat RNA-Secondary-Structure-Formats
  sam http://hl7.org/fhir/genomicstudy-dataformat SAM
  sample-info-attributes-file http://hl7.org/fhir/genomicstudy-dataformat Sample-Info-Attributes-file
  seg http://hl7.org/fhir/genomicstudy-dataformat SEG
  tdf http://hl7.org/fhir/genomicstudy-dataformat TDF
  track-line http://hl7.org/fhir/genomicstudy-dataformat Track Line
  type-line http://hl7.org/fhir/genomicstudy-dataformat Type Line
  vcf http://hl7.org/fhir/genomicstudy-dataformat VCF
  wig http://hl7.org/fhir/genomicstudy-dataformat WIG

 

See the full registry of value sets defined as part of FHIR.

Explanation of the columns that may appear on this page:

Lvl A few code lists that FHIR defines are hierarchical - each code is assigned a level. For value sets, levels are mostly used to organize codes for user convenience, but may follow code system hierarchy - see Code System for further information
Source The source of the definition of the code (when the value set draws in codes defined elsewhere)
Code The code (used as the code in the resource instance). If the code is in italics, this indicates that the code is not selectable ('Abstract')
Display The display (used in the display element of a Coding). If there is no display, implementers should not simply display the code, but map the concept into their application
Definition An explanation of the meaning of the concept
Comments Additional notes about how to use the code